RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 ACADSBP45954 432 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 OR3A2P47893 321 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 CDR2Q01850 454 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 HYAL1Q12794 435 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ILF3Q12906 894 aaKnown RBP eCLIP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 SNTB2Q13425 540 aaKnown RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 BTG3Q14201 252 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ZKSCAN8Q15776 578 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 CCDC6Q16204 474 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ZSWIM7Q19AV6 140 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 SLC36A3Q495N2 470 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 FAM106AQ4KMX7 169 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 LRRC23Q53EV4 343 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 SPATA46Q5T0L3 261 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ATP1A1-AS1Q5TC04 95 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ARHGEF16Q5VV41 709 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 LIPKQ5VXJ0 399 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ARHGAP17Q68EM7 881 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 NADSYN1Q6IA69 706 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 CENPPQ6IPU0 288 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 CES3Q6UWW8 571 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 RBM23Q86U06 439 aaKnown RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 CUZD1Q86UP6 607 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 CACUL1Q86Y37 369 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 GCNT2Q8N0V5 402 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 NIPA2Q8N8Q9 360 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 FAM133AQ8N9E0 248 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ADAD2Q8NCV1 583 aaKnown RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 OR4C3Q8NH37 302 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 GOLGA5Q8TBA6 731 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 MCHR2Q969V1 340 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 PINX1Q96BK5 328 aaKnown RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ZNF274Q96GC6 653 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 ERGIC2Q96RQ1 377 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 FAM124BQ9H5Z6 455 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 C6orf106Q9H6K1 298 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 WDR76Q9H967 626 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 COG4Q9H9E3 785 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 PALMDQ9NP74 551 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 SIX2Q9NPC8 291 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 INTS9Q9NV88 658 aaKnown RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 POMT2Q9UKY4 750 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 MRPS7Q9Y2R9 242 aaKnown RBP3.97□□□□□ -1.77
VPS13A-211ENST00000484581 PPP2R2CQ9Y2T4 447 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 SELENOKQ9Y6D0 94 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 RAD54L2Q9Y4B4 1467 aa3.97□□□□□ -1.77
VPS13A-211ENST00000484581 LMO7DNF2Z398 122 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 BUB1O43683 1085 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 SNX4O95219 450 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 PAK4O96013 591 aaPredicted RBP3.96□□□□□ -1.78
VPS13A-211ENST00000484581 HMBSP08397 361 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 MARK3P27448 753 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 HTR2AP28223 471 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 PTPN6P29350 595 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 NPY2RP49146 381 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 SPIBQ01892 262 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 IL24Q13007 206 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 ANKRD55Q3KP44 614 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 ACCSLQ4AC99 568 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 ZNF585BQ52M93 769 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 SPANXN4Q5MJ08 99 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 C1orf189Q5VU69 101 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 SLC25A47Q6Q0C1 308 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 CWC27Q6UX04 472 aaKnown RBP3.96□□□□□ -1.78
VPS13A-211ENST00000484581 Q6ZTC4 211 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 C18orf65Q6ZTR6 163 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 WDR49Q8IV35 697 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 PARP8Q8N3A8 854 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 MAB21L3Q8N8X9 362 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 MLKLQ8NB16 471 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 KLHDC9Q8NEP7 349 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 GPR148Q8TDV2 347 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 GATAD1Q8WUU5 269 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 TMEM37Q8WXS4 190 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 TM9SF4Q92544 642 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 OMA1Q96E52 524 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 SENP5Q96HI0 755 aaPredicted RBP3.96□□□□□ -1.78
VPS13A-211ENST00000484581 MAGED4Q96JG8 741 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 NKX3-1Q99801 234 aaPredicted RBP3.96□□□□□ -1.78
VPS13A-211ENST00000484581 TMEM117Q9H0C3 514 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 FNDC4Q9H6D8 234 aaPredicted RBP3.96□□□□□ -1.78
VPS13A-211ENST00000484581 MED17Q9NVC6 651 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 MIOXQ9UGB7 285 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 CHMP2BQ9UQN3 213 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 MAB21L2Q9Y586 359 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 SPATA31D1Q6ZQQ2 1576 aa3.96□□□□□ -1.78
VPS13A-211ENST00000484581 RNF123Q5XPI4 1314 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 KIAA1210Q9ULL0 1709 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 SH3PXD2BA1X283 911 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 E9PMD0 336 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 SGK494L7N484 410 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 CXCL11O14625 94 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 B4GAT1O43505 415 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 RHOBTB1O94844 696 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 NDUFA7O95182 113 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 CLPTM1O96005 669 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 CA3P07451 260 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 DRD5P21918 477 aa3.95□□□□□ -1.78
VPS13A-211ENST00000484581 PBLDP30039 288 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms