RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 AGGF1Q8N302 714 aaeCLIP11.6□□□□□ -0.55
SKA3-206ENST00000475251 NKAPQ8N5F7 415 aaKnown RBP11.6□□□□□ -0.55
SKA3-206ENST00000475251 NAT8LQ8N9F0 302 aa11.6□□□□□ -0.55
SKA3-206ENST00000475251 SREK1Q8WXA9 508 aaKnown RBP11.6□□□□□ -0.55
SKA3-206ENST00000475251 MAGOHBQ96A72 148 aaKnown RBP11.6□□□□□ -0.55
SKA3-206ENST00000475251 CERS2Q96G23 380 aa11.6□□□□□ -0.55
SKA3-206ENST00000475251 KCNC2Q96PR1 638 aa11.6□□□□□ -0.55
SKA3-206ENST00000475251 CSF3RQ99062 836 aa11.6□□□□□ -0.55
SKA3-206ENST00000475251 SMR3AQ99954 134 aa11.6□□□□□ -0.55
SKA3-206ENST00000475251 PLEKHF2Q9H8W4 249 aa11.6□□□□□ -0.55
SKA3-206ENST00000475251 SEMA4BQ9NPR2 832 aaPredicted RBP11.6□□□□□ -0.55
SKA3-206ENST00000475251 PPANQ9NQ55 473 aaKnown RBP11.6□□□□□ -0.55
SKA3-206ENST00000475251 GPRC5BQ9NZH0 403 aa11.6□□□□□ -0.55
SKA3-206ENST00000475251 CLCA1A8K7I4 914 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 GOLGA6L6A8MZA4 724 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 ZNF354AO60765 605 aaPredicted RBP11.59□□□□□ -0.55
SKA3-206ENST00000475251 ZNF37AP17032 561 aaPredicted RBP11.59□□□□□ -0.55
SKA3-206ENST00000475251 SERPINB3P29508 390 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 OPRM1P35372 400 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 RPL21P46778 160 aaKnown RBP11.59□□□□□ -0.55
SKA3-206ENST00000475251 KCTD19Q17RG1 926 aaPredicted RBP11.59□□□□□ -0.55
SKA3-206ENST00000475251 PRAMEF20Q5VT98 475 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 TMEM198Q66K66 360 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 ADAMTSL2Q86TH1 951 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 ZNF321PQ8N8H1 164 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 NAXEQ8NCW5 288 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 TNIP2Q8NFZ5 429 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 TRIM58Q8NG06 486 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 ZNF721Q8TF20 911 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 GRK7Q8WTQ7 553 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 ARSGQ96EG1 525 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 CAPZA3Q96KX2 299 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 ZNF597Q96LX8 424 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 JSRP1Q96MG2 331 aaPredicted RBP11.59□□□□□ -0.55
SKA3-206ENST00000475251 DGAT2Q96PD7 388 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 KCNK17Q96T54 332 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 DOHHQ9BU89 302 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 SLC6A15Q9H2J7 730 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 EHD1Q9H4M9 534 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 SH2D2AQ9NP31 389 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 OARD1Q9Y530 152 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 EML6Q6ZMW3 1958 aa11.59□□□□□ -0.55
SKA3-206ENST00000475251 EEF1E1-BLOC1S5C9J1V9 151 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 CLGNO14967 610 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 EEF1E1O43324 174 aaKnown RBP11.58□□□□□ -0.56
SKA3-206ENST00000475251 LDB3O75112 727 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 ETHE1O95571 254 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 RFPL3SP0C7P2 107 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 GDF1P27539 372 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 CXCR5P32302 372 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 MSH2P43246 934 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 DUSP8Q13202 625 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 NSUN5P2Q63ZY6 315 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 TTC27Q6P3X3 843 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 CCDC137Q6PK04 289 aaKnown RBP11.58□□□□□ -0.56
SKA3-206ENST00000475251 SLC29A4Q7RTT9 530 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 TCAIMQ8N3R3 496 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 RASGEF1CQ8N431 466 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 FAM13CQ8NE31 585 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 RBM18Q96H35 190 aaKnown RBP11.58□□□□□ -0.56
SKA3-206ENST00000475251 NAP1L3Q99457 506 aaPredicted RBP11.58□□□□□ -0.56
SKA3-206ENST00000475251 TBCDQ9BTW9 1192 aa11.58□□□□□ -0.56
SKA3-206ENST00000475251 CNOT10Q9H9A5 744 aaKnown RBP11.58□□□□□ -0.56
SKA3-206ENST00000475251 FBN3Q75N90 2809 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 ANKRD33BA6NCL7 494 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 NPEPPSL1A6NEC2 478 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 LRRC3CA6NJW4 275 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CD8B2A6NJW9 211 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CAPN14A8MX76 684 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CDC7O00311 574 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 IL18BPO95998 194 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 C1QAP02745 245 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 FBXO45P0C2W1 286 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CD53P19397 219 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CPN2P22792 545 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CTSSP25774 331 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 STT3AP46977 705 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 SLC6A12P48065 614 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 TRPC1P48995 793 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 ZNF136P52737 540 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 PLIN5Q00G26 463 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CRYZQ08257 329 aaKnown RBP11.57□□□□□ -0.56
SKA3-206ENST00000475251 LAPTM5Q13571 262 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 HIST2H2ACQ16777 129 aaPredicted RBP11.57□□□□□ -0.56
SKA3-206ENST00000475251 PAGE2BQ5JRK9 111 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 TEDDM1Q5T9Z0 273 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 HIST2H2AA3Q6FI13 130 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 P3H2Q8IVL5 708 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 C9orf40Q8IXQ3 194 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 TAGAPQ8N103 731 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 LRRC75A-AS1Q8N1F1 130 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 LINC01560Q8TB33 94 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 SMPDL3BQ92485 455 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 ISL2Q96A47 359 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 RHBDF1Q96CC6 855 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 PTCD3Q96EY7 689 aaKnown RBP11.57□□□□□ -0.56
SKA3-206ENST00000475251 SENP5Q96HI0 755 aaPredicted RBP11.57□□□□□ -0.56
SKA3-206ENST00000475251 FBXL20Q96IG2 436 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 DACH2Q96NX9 599 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 TIMP4Q99727 224 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms