RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 KLC3Q6P597 504 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 CEP128Q6ZU80 1094 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 GPR180Q86V85 440 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 MYLK4Q86YV6 388 aaPredicted RBP15.11■□□□□ 0.01
COL9A3-208ENST00000469802 MCEMP1Q8IX19 187 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 PLD6Q8N2A8 252 aaKnown RBP15.11■□□□□ 0.01
COL9A3-208ENST00000469802 MMGT1Q8N4V1 131 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 OR2M7Q8NG81 312 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 FAM57AQ8TBR7 257 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 WDR20Q8TBZ3 569 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 SLC44A1Q8WWI5 657 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 CENPKQ9BS16 269 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 RPF2Q9H7B2 306 aaKnown RBP15.11■□□□□ 0.01
COL9A3-208ENST00000469802 ACTR8Q9H981 624 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 DMGDHQ9UI17 866 aaKnown RBP15.11■□□□□ 0.01
COL9A3-208ENST00000469802 PHF11Q9UIL8 331 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 ERVK-11Q9UQG0 969 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 ATG4BQ9Y4P1 393 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 ANGPTL3Q9Y5C1 460 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 TNPO3Q9Y5L0 923 aaKnown RBP15.11■□□□□ 0.01
COL9A3-208ENST00000469802 ADGRG4Q8IZF6 3080 aa15.11■□□□□ 0.01
COL9A3-208ENST00000469802 A0A1B0GTH9 108 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 PINLYPA6NC86 204 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 PRRG2O14669 202 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 CLDN14O95500 239 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 TNFRSF8P28908 595 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 PTGS2P35354 604 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 PTGER4P35408 488 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 BSGP35613 385 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 RAP1GDS1P52306 607 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 PLIN5Q00G26 463 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 CUL3Q13618 768 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 MPEG1Q2M385 716 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 IL20RBQ6UXL0 311 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 RTL4Q6ZR62 310 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 C9orf40Q8IXQ3 194 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 GOLM1Q8NBJ4 401 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 NOA1Q8NC60 698 aaKnown RBP15.1■□□□□ 0.01
COL9A3-208ENST00000469802 OR52N2Q8NGI0 321 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 OR5L2Q8NGL0 311 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 NUBPLQ8TB37 319 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 REPS1Q96D71 796 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 SCYL1Q96KG9 808 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 DDX31Q9H8H2 851 aaKnown RBP15.1■□□□□ 0.01
COL9A3-208ENST00000469802 IPPKQ9H8X2 491 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 ZDHHC11Q9H8X9 412 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 PSD3Q9NYI0 1048 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 CPSF2Q9P2I0 782 aaKnown RBP15.1■□□□□ 0.01
COL9A3-208ENST00000469802 COPS7AQ9UBW8 275 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 MTRF1LQ9UGC7 380 aaKnown RBP15.1■□□□□ 0.01
COL9A3-208ENST00000469802 ASB4Q9Y574 426 aa15.1■□□□□ 0.01
COL9A3-208ENST00000469802 CSMD2Q7Z408 3487 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 OR7A17O14581 309 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 PROM1O43490 865 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 TMPRSS11DO60235 418 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 EEDO75530 441 aaKnown RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 PRKRAO75569 313 aaKnown RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 URI1O94763 535 aaPredicted RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 GLSO94925 669 aaPredicted RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 ACSL3O95573 720 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 COX7A2P14406 83 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 TNNI3P19429 210 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 PTX3P26022 381 aaPredicted RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 PHEXP78562 749 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 FOLH1Q04609 750 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 BIKQ13323 160 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 CPSF6Q16630 551 aaKnown RBP eCLIP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 SPRED3Q2MJR0 410 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 C18orf63Q68DL7 685 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 ARHGAP11AQ6P4F7 1023 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 C3P1Q6ZMU1 363 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 DGAT2L6Q6ZPD8 337 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 CD163Q86VB7 1156 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 OR4N5Q8IXE1 308 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 EID3Q8N140 333 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 PTGR2Q8N8N7 351 aaPredicted RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 ACBD4Q8NC06 268 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 OR52B6Q8NGF0 335 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 SREK1Q8WXA9 508 aaKnown RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 TANKQ92844 425 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 SENP5Q96HI0 755 aaPredicted RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 FBXL20Q96IG2 436 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 SGCZQ96LD1 299 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 DGAT2Q96PD7 388 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 PAFAH2Q99487 392 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 FMO2Q99518 471 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 TTTY12Q9BZ98 90 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 TSPYL1Q9H0U9 437 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 VPS11Q9H270 941 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 ZNF358Q9NW07 568 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 LYARQ9NX58 379 aaKnown RBP15.09■□□□□ 0.01
COL9A3-208ENST00000469802 RNF11Q9Y3C5 154 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 HRH3Q9Y5N1 445 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 ARHGAP21Q5T5U3 1957 aa15.09■□□□□ 0.01
COL9A3-208ENST00000469802 OTOGQ6ZRI0 2925 aa15.08■□□□□ 0
COL9A3-208ENST00000469802 STX16-NPEPL1H3BU86 382 aa15.08■□□□□ 0
COL9A3-208ENST00000469802 C19orf84I3L1E1 186 aa15.08■□□□□ 0
COL9A3-208ENST00000469802 HRKO00198 91 aa15.08■□□□□ 0
COL9A3-208ENST00000469802 FOXE1O00358 373 aaPredicted RBP15.08■□□□□ 0
COL9A3-208ENST00000469802 STX16O14662 325 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 169.3 ms