RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SLC22A16Q86VW1 577 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 CREG2Q8IUH2 290 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 C9orf106Q8NAJ2 232 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 B3GNT7Q8NFL0 401 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 OR8K1Q8NGG5 319 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 MCOLN3Q8TDD5 553 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 DOK4Q8TEW6 326 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 SLC44A1Q8WWI5 657 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 SLC13A3Q8WWT9 602 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 SARAFQ96BY9 339 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 WFIKKN1Q96NZ8 548 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 OR1F2PQ96R84 312 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 TIMP4Q99727 224 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 CCL19Q99731 98 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 C19orf24Q9BVV8 132 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 SARGQ9BW04 601 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 EXO5Q9H790 373 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 SH2D2AQ9NP31 389 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 LMBRD1Q9NUN5 540 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 TMEM184CQ9NVA4 438 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 ANO10Q9NW15 660 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 HPF1Q9NWY4 346 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 GALNT8Q9NY28 637 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 CAPN11Q9UMQ6 739 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 ATG4BQ9Y4P1 393 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 PCDHA3Q9Y5H8 950 aa4.84□□□□□ -1.63
PTPN4-209ENST00000469511 BZW2Q9Y6E2 419 aaKnown RBP4.84□□□□□ -1.63
PTPN4-209ENST00000469511 KCNE1BA0A087WTH5 132 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 A0A0G2JN53 185 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ACOT7O00154 380 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CD3EAPO15446 510 aaKnown RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 SPOPO43791 374 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 PHF2O75151 1096 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ACSL3O95573 720 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 PLAUP00749 431 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 SERPIND1P05546 499 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF888P0CJ79 500 aaPredicted RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CDH1P12830 882 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 GABRA1P14867 456 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 BMP7P18075 431 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 NMBRP28336 390 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 TIMP3P35625 211 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 PEX19P40855 299 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 HK2P52789 917 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ADARP55265 1226 aaKnown RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 RPS15AP62244 130 aaKnown RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CRYZQ08257 329 aaKnown RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 DMTNQ08495 405 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 FAM27E3Q08E93 113 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 RUNX2Q13950 521 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 TMED2Q15363 201 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 STX1AQ16623 288 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 PRSS53Q2L4Q9 553 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 PARP6Q2NL67 630 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ODF2Q5BJF6 829 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CATSPEREQ5SY80 951 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 RNF187Q5TA31 235 aaPredicted RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 THEMIS2Q5TEJ8 643 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 NDUFAF5Q5TEU4 345 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 PRAMEF20Q5VT98 475 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 KIAA0930Q6ICG6 404 aaPredicted RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CAPN13Q6MZZ7 669 aaPredicted RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 AFTPHQ6ULP2 937 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 SASS6Q6UVJ0 657 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CES3Q6UWW8 571 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CYP2R1Q6VVX0 501 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 QSOX2Q6ZRP7 698 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 RGS9BPQ6ZS82 235 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 KIAA1328Q86T90 577 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 KIF18BQ86Y91 864 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 REXO1L1PQ8IX06 675 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 KATNAL2Q8IYT4 538 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 RAB42Q8N4Z0 105 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 FAM71DQ8N9W8 422 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 MFSD9Q8NBP5 474 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CAMKVQ8NCB2 501 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 UTP15Q8TED0 518 aaKnown RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ASB15Q8WXK1 588 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 SMPDL3BQ92485 455 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 PIGTQ969N2 578 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ANKRD9Q96BM1 317 aaPredicted RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 PIK3IP1Q96FE7 263 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 MARK4Q96L34 752 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 DACH2Q96NX9 599 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ALS2CR12Q96Q35 445 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 FAM173AQ9BQD7 235 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 RBM24Q9BX46 236 aaKnown RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF703Q9H7S9 590 aaPredicted RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CHRAC1Q9NRG0 131 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CATSPERZQ9NTU4 200 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 KLHL28Q9NXS3 571 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 MYOTQ9UBF9 498 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF629Q9UEG4 869 aaPredicted RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 MTRF1LQ9UGC7 380 aaKnown RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 FEZ2Q9UHY8 353 aaPredicted RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 ADAMTS6Q9UKP5 1117 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 CRYL1Q9Y2S2 319 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 MED16Q9Y2X0 877 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 YARS2Q9Y2Z4 477 aaKnown RBP4.83□□□□□ -1.64
PTPN4-209ENST00000469511 SLC6A5Q9Y345 797 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms