RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SPDYE7PQ495Y7 208 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 FAM46CQ5VWP2 391 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 RBM45Q8IUH3 476 aaKnown RBP8.5□□□□□ -1.05
SYNE1-217ENST00000466159 TAGAPQ8N103 731 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 DENND6BQ8NEG7 585 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 ZHX1-C8orf76Q96EF9 292 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 C12orf66Q96MD2 445 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 INSM2Q96T92 566 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-217ENST00000466159 MACROD1Q9BQ69 325 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 SLIRPQ9GZT3 109 aaKnown RBP8.5□□□□□ -1.05
SYNE1-217ENST00000466159 ZBTB20Q9HC78 741 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-217ENST00000466159 IMPAD1Q9NX62 359 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 MS4A12Q9NXJ0 267 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 TAS2R16Q9NYV7 291 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 DUSP12Q9UNI6 340 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 PLEKHM1Q9Y4G2 1056 aa8.5□□□□□ -1.05
SYNE1-217ENST00000466159 IGKV1-8A0A0C4DH67 115 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 A8MVJ9 347 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 KMOO15229 486 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 ZSCAN9O15535 394 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 AIREO43918 545 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 PRKRAO75569 313 aaKnown RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 PTHP01270 115 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 ADRA2AP08913 450 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 CHMP24386 653 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 GADD45AP24522 165 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 POU1F1P28069 291 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 PTGER1P34995 402 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 CSNK1G2P78368 415 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 IFITM3Q01628 133 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 KCNC4Q03721 635 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 RUNX3Q13761 415 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 IRF4Q15306 451 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 TBCEQ15813 527 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 CST6Q15828 149 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 INAQ16352 499 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 PERM1Q5SV97 790 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF770Q6IQ21 691 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 SZRD1Q7Z422 152 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 NUDT13Q86X67 352 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 DEPDC4Q8N2C3 294 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 MFSD4AQ8N468 514 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 STX19Q8N4C7 294 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 HDDC3Q8N4P3 179 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 OR6Q1Q8NGQ2 317 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 RGMAQ96B86 450 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 TEFMQ96QE5 360 aaKnown RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 C17orf62Q9BQA9 187 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 TEX101Q9BY14 249 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 PLA2G2FQ9BZM2 168 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 AICDAQ9GZX7 198 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 PCBD2Q9H0N5 130 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 SERHL2Q9H4I8 314 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 WDR26Q9H7D7 661 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 A4GALTQ9NPC4 353 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 IMP3Q9NV31 184 aaKnown RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 KCNK6Q9Y257 313 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 STON1Q9Y6Q2 735 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 A0A1W2PP55 124 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 FUOMA2VDF0 154 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 PRAMEF27A3QJZ7 478 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 GLOD5A6NK44 160 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 ANHXE9PGG2 379 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 BOLA2-SMG1P6H3BVE0 249 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 SCAMP1O15126 338 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 ADORA3P0DMS8 318 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 HOXB3P14651 431 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 CD72P21854 359 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 GRK5P34947 590 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 CNR2P34972 360 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 HSD17B2P37059 387 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 FRKP42685 505 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 SERPINB10P48595 397 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 CCT3P49368 545 aaKnown RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 CLK1P49759 484 aaKnown RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 SEC23BQ15437 767 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 C2orf27AQ580R0 203 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 COLEC12Q5KU26 742 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 FRMPD2BQ6IN97 320 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 TCTN3Q6NUS6 607 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 OLIG3Q7RTU3 272 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 SLC30A8Q8IWU4 369 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 B3GNT7Q8NFL0 401 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 OR4D11Q8NGI4 311 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 OR5D16Q8NGK9 328 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 VANGL1Q8TAA9 524 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF675Q8TD23 568 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 FCGR1BQ92637 280 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 OTUB1Q96FW1 271 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 WDR12Q9GZL7 423 aaKnown RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 DCSTAMPQ9H295 470 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 KLHL31Q9H511 634 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 NEUROD4Q9HD90 331 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 FBXO8Q9NRD0 319 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 WBP1LQ9NX94 342 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 FTSJ1Q9UET6 329 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 OSGIN1Q9UJX0 560 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 KCND3Q9UK17 655 aa8.49□□□□□ -1.05
SYNE1-217ENST00000466159 ZFR2Q9UPR6 939 aaKnown RBP8.49□□□□□ -1.05
SYNE1-217ENST00000466159 MYO9BQ13459 2157 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms