RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SLC26A3P40879 764 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 VPS41P49754 854 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 TERF1P54274 439 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 EMP2P54851 167 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 TAP2Q03519 686 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 Q0VFX4 171 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 MFAP5Q13361 173 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 THOC5Q13769 683 aaKnown RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 FAM53BQ14153 422 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ZNF169Q14929 603 aaPredicted RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 VWA2Q5GFL6 755 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ANKRD22Q5VYY1 191 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ICE2Q659A1 982 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ZNF470Q6ECI4 717 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ZNF425Q6IV72 752 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 RPUSD3Q6P087 351 aaKnown RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 FAM180AQ6UWF9 173 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ISLR2Q6UXK2 745 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 NDUFAF7Q7L592 441 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 KCNMB4Q86W47 210 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 DENND6AQ8IWF6 608 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 CSNK1A1LQ8N752 337 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 MCUQ8NE86 351 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 HOXB13Q92826 284 aaPredicted RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 CAVIN3Q969G5 261 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 RERGQ96A58 199 aaPredicted RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 MAGOHBQ96A72 148 aaKnown RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 PBKQ96KB5 322 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 C5orf34Q96MH7 638 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 SERPINB12Q96P63 405 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 OR2A5Q96R48 311 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 NAP1L3Q99457 506 aaPredicted RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 EBNA1BP2Q99848 306 aaKnown RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 MKKSQ9NPJ1 570 aaPredicted RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 TAC3Q9UHF0 121 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 C3orf18Q9UK00 162 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 RUVBL1Q9Y265 456 aaKnown RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 NTNG1Q9Y2I2 539 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 MED16Q9Y2X0 877 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 DHRS7Q9Y394 339 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 JRKLQ9Y4A0 524 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 CSAG2Q9Y5P2 127 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 SEC16AO15027 2179 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 PCM1Q15154 2024 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 IDSB3KWA1 339 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 ANXA5P08758 320 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 COX6A1P12074 109 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 OSMP13725 252 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 FPR1P21462 350 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 HRH2P25021 359 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 COILP38432 576 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 SKIV2L2P42285 1042 aaKnown RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 SLC1A2P43004 574 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 MAGEA3P43357 314 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 AP2B1P63010 937 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 CCZ1BP86790 482 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 CCZ1P86791 482 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 FOXI1Q12951 378 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 CDC16Q13042 620 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 SP140Q13342 867 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 CTBP1Q13363 440 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 CUL1Q13616 776 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 TSTA3Q13630 321 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 CYP1B1Q16678 543 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 NDUFA9Q16795 377 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 LONRF1Q17RB8 773 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 KCTD19Q17RG1 926 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 HKDC1Q2TB90 917 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 LRRC8EQ6NSJ5 796 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 UGT3A1Q6NUS8 523 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 TTC27Q6P3X3 843 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 ZNF549Q6P9A3 640 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 CCDC137Q6PK04 289 aaKnown RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 CYHR1Q6ZMK1 362 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 PRSS58Q8IYP2 241 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 AMER3Q8N944 861 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 NAT8LQ8N9F0 302 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 PPFIBP2Q8ND30 876 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 GABPB2Q8TAK5 448 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 GRHL3Q8TE85 626 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 GRK7Q8WTQ7 553 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 FAR1Q8WVX9 515 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 LINC00476Q8WZB0 136 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 C8orf44Q96CB5 159 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 MMABQ96EY8 250 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 CNDP1Q96KN2 507 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 ADI1Q9BV57 179 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 DRC3Q9H069 523 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 ZNF160Q9HCG1 818 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 FBXO6Q9NRD1 293 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 C20orf96Q9NUD7 363 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 STOX2Q9P2F5 926 aaPredicted RBP6.85□□□□□ -1.31
USP54-208ENST00000461520 TRPC4Q9UBN4 977 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 PCYOX1Q9UHG3 505 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 PPP2R2CQ9Y2T4 447 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 NEU2Q9Y3R4 380 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 NUP210LQ5VU65 1888 aa6.85□□□□□ -1.31
USP54-208ENST00000461520 LOC102723996A0A087X1L8 192 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 IGHV1-45A0A0A0MS14 117 aa6.84□□□□□ -1.31
USP54-208ENST00000461520 A0A0A6YYC8 382 aaPredicted RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms