RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RGCCQ9H4X1 137 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 KAT8Q9H7Z6 458 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 HEYLQ9NQ87 328 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DDX19AQ9NUU7 478 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 MED17Q9NVC6 651 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 FGFR1OP2Q9NVK5 253 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 MRPS18AQ9NVS2 196 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 IMPAD1Q9NX62 359 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GLTPQ9NZD2 209 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 MRPL15Q9P015 296 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 VAPAQ9P0L0 249 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DNAJB11Q9UBS4 358 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SERGEFQ9UGK8 458 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 NDRG3Q9UGV2 375 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 NFU1Q9UMS0 254 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GUCA1BQ9UMX6 200 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TP53TG5Q9Y2B4 290 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 LTBP2Q14767 1821 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DOCK3Q8IZD9 2030 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 DUXAA6NLW8 204 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 OR52A4PA6NMU1 304 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 A8MUA0 341 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 LEUTXA8MZ59 168 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 E7ESA3 106 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 F8WDY8 70 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PRAMEF26H0Y7S4 382 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GRM6O15303 877 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TLX2O43763 284 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PRAMEF11O60813 436 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 OR6B1O95007 311 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ACSL3O95573 720 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 DDAH2O95865 285 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GSRP00390 522 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 KLKB1P03952 638 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 IFNA4P05014 189 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ADRB1P08588 477 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CYP2C8P10632 490 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MBL2P11226 248 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 COX4I1P13073 169 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 UCP1P25874 307 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PCSK6P29122 969 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GRK5P34947 590 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PTPN7P35236 360 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NR4A2P43354 598 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GATA4P43694 442 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 RPL5P46777 297 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CDK9P50750 372 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PRKAG1P54619 331 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SIM1P81133 766 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CACNG1Q06432 222 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MGAT3Q09327 533 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SCAPQ12770 1279 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NFATC3Q12968 1075 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 AQP6Q13520 282 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GAMTQ14353 236 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GRK1Q15835 563 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CR1LQ2VPA4 569 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT3A2Q3SY77 523 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PLAC9Q5JTB6 97 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PRAMEF5Q5TYX0 476 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PRAMEF6Q5VXH4 476 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 WBP2NLQ6ICG8 309 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CLEC9AQ6UXN8 241 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CCNI2Q6ZMN8 369 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 Q6ZNB5 142 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 RBM44Q6ZP01 1051 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 KCTD9Q7L273 389 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SYT13Q7L8C5 426 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TFAP2DQ7Z6R9 452 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ADGRD2Q7Z7M1 963 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 S100A7AQ86SG5 101 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GPR180Q86V85 440 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ZDHHC13Q8IUH4 622 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 LCORLQ8N3X6 602 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ADPRHL1Q8NDY3 354 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM104Q8NE00 496 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 IGDCC4Q8TDY8 1250 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SMPDL3AQ92484 453 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ELMO1Q92556 727 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 FIG4Q92562 907 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MAP4K1Q92918 833 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 RAB1CQ92928 201 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 EID2BQ96D98 161 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 DAZAP1Q96EP5 407 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NUDT11Q96G61 164 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GUCD1Q96NT3 240 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SLITRK1Q96PX8 696 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GCNAQ96QF7 691 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 DIRC2Q96SL1 478 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PFDN5Q99471 154 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PRRT1Q99946 306 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 P2RY13Q9BPV8 354 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 WDR77Q9BQA1 342 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CLSTN3Q9BQT9 956 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NAA11Q9BSU3 229 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PTDSS2Q9BVG9 487 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NELFAQ9H3P2 528 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ZFP14Q9HCL3 533 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PARD6AQ9NPB6 346 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 LTB4R2Q9NPC1 389 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms