RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 MYOTQ9UBF9 498 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 COPS7AQ9UBW8 275 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 FETUBQ9UGM5 382 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 NPIPA1Q9UND3 350 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 TMEM200CA6NKL6 621 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 A8MVJ9 347 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 KLRC4-KLRK1H3BQV0 150 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 DYRK3O43781 588 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 TMPRSS11DO60235 418 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 PRKRAO75569 313 aaKnown RBP19.72■□□□□ 0.75
HMGB3-205ENST00000455596 OR2J2O76002 312 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 WISP2O76076 250 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 OTCP00480 354 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 FAM58BPP0C7Q3 252 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 TAC1P20366 129 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 HK2P52789 917 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 PLIN5Q00G26 463 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 IFT88Q13099 833 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 RPS27LQ71UM5 84 aaKnown RBP19.72■□□□□ 0.75
HMGB3-205ENST00000455596 CNPY4Q8N129 248 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 ZNF321PQ8N8H1 164 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 POGLUT1Q8NBL1 392 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 ZNF721Q8TF20 911 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 ZNF483Q8TF39 744 aaPredicted RBP19.72■□□□□ 0.75
HMGB3-205ENST00000455596 ASB15Q8WXK1 588 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 RBM18Q96H35 190 aaKnown RBP19.72■□□□□ 0.75
HMGB3-205ENST00000455596 C1QTNF3Q9BXJ4 246 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 WDR41Q9HAD4 459 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 HPF1Q9NWY4 346 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 TMEM216Q9P0N5 145 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 PSMC3IPQ9P2W1 217 aaPredicted RBP19.72■□□□□ 0.75
HMGB3-205ENST00000455596 ERVK-11Q9UQG0 969 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 ASB4Q9Y574 426 aa19.72■□□□□ 0.75
HMGB3-205ENST00000455596 WWP2O00308 870 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 NR2F6P10588 404 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 ZNF24P17028 368 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 CA7P43166 264 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 MEOX1P50221 254 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 CASP6P55212 293 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 RNF4P78317 190 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 C16orf47Q6ZP98 133 aaPredicted RBP19.71■□□□□ 0.75
HMGB3-205ENST00000455596 SULF2Q8IWU5 870 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 GSPT2Q8IYD1 628 aaKnown RBP19.71■□□□□ 0.75
HMGB3-205ENST00000455596 LRRN4CLQ8ND94 238 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 OR5L2Q8NGL0 311 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 ART5Q96L15 291 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 RASL10BQ96S79 203 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 PELOQ9BRX2 385 aaKnown RBP19.71■□□□□ 0.75
HMGB3-205ENST00000455596 ELOVL6Q9H5J4 265 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 TIMMDC1Q9NPL8 285 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 AHSPQ9NZD4 102 aa19.71■□□□□ 0.75
HMGB3-205ENST00000455596 SPTAN1Q13813 2472 aaKnown RBP19.71■□□□□ 0.75
HMGB3-205ENST00000455596 A0A1W2PR48 441 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 ASNA1O43681 348 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 SLC19A2O60779 497 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 ZG16O60844 167 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 ALOX15P16050 662 aaPredicted RBP19.7■□□□□ 0.74
HMGB3-205ENST00000455596 CDH13P55290 713 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 HERVK_113P63132 956 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 SIAH3Q8IW03 269 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 ST13P4Q8IZP2 240 aaPredicted RBP19.7■□□□□ 0.74
HMGB3-205ENST00000455596 EIF1ADQ8N9N8 165 aaKnown RBP19.7■□□□□ 0.74
HMGB3-205ENST00000455596 MYRIPQ8NFW9 859 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 ACMSDQ8TDX5 336 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 SREK1Q8WXA9 508 aaKnown RBP19.7■□□□□ 0.74
HMGB3-205ENST00000455596 PPWD1Q96BP3 646 aaKnown RBP19.7■□□□□ 0.74
HMGB3-205ENST00000455596 MAGED4Q96JG8 741 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 ERVK-6Q9BXR3 956 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 EPB41L4BQ9H329 900 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 SUCOQ9UBS9 1254 aaKnown RBP19.7■□□□□ 0.74
HMGB3-205ENST00000455596 SNX6Q9UNH7 406 aa19.7■□□□□ 0.74
HMGB3-205ENST00000455596 GLOD5A6NK44 160 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 GOLGA8RI6L899 631 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 CCL21O00585 134 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 PEX1O43933 1283 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 GPR75O95800 540 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 AIFM1O95831 613 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 GBAP04062 536 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 TSPAN8P19075 237 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 SOX3P41225 446 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 CLCQ05315 142 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 LETMD1Q6P1Q0 360 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 IL20RBQ6UXL0 311 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 PAGE2Q7Z2X7 111 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 MDGA2Q7Z553 956 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 GHDCQ8N2G8 530 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 PSD4Q8NDX1 1056 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 SENP5Q96HI0 755 aaPredicted RBP19.69■□□□□ 0.74
HMGB3-205ENST00000455596 TBK1Q9UHD2 729 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 TRPS1Q9UHF7 1281 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 SH3BGRL2Q9UJC5 107 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 ADAM29Q9UKF5 820 aa19.69■□□□□ 0.74
HMGB3-205ENST00000455596 A0A1B0GTL3 188 aa19.68■□□□□ 0.74
HMGB3-205ENST00000455596 ARHGAP10A1A4S6 786 aa19.68■□□□□ 0.74
HMGB3-205ENST00000455596 PPP6CO00743 305 aa19.68■□□□□ 0.74
HMGB3-205ENST00000455596 OR10H2O60403 315 aa19.68■□□□□ 0.74
HMGB3-205ENST00000455596 SUPT7LO94864 414 aa19.68■□□□□ 0.74
HMGB3-205ENST00000455596 OR6B1O95007 311 aa19.68■□□□□ 0.74
HMGB3-205ENST00000455596 GSTA1P08263 222 aa19.68■□□□□ 0.74
HMGB3-205ENST00000455596 HSD17B3P37058 310 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms