RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 KDELR2P33947 212 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 MPIP34949 423 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 CDK9P50750 372 aaKnown RBP13.46□□□□□ -0.25
USP39-207ENST00000450066 SPIDRQ14159 915 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 PRTGQ2VWP7 1150 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 SPDYE7PQ495Y7 208 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 CMPK2Q5EBM0 449 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 GCNT6Q5T4J0 391 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 ENPP6Q6UWR7 440 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 RABEPKQ7Z6M1 372 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 AMIGO2Q86SJ2 522 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 FAM86B1Q8N7N1 296 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 ANKFN1Q8N957 763 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 SUN3Q8TAQ9 357 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 SAP25Q8TEE9 199 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 ZNF285Q96NJ3 590 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 MAGIXQ9H6Y5 334 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 YY1AP1Q9H869 796 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 PDE7BQ9NP56 450 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 PADI4Q9UM07 663 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 SAMD4AQ9UPU9 718 aaKnown RBP13.46□□□□□ -0.25
USP39-207ENST00000450066 DTNAQ9Y4J8 743 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 ZNF780BQ9Y6R6 833 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 CABIN1Q9Y6J0 2220 aa13.46□□□□□ -0.25
USP39-207ENST00000450066 DUX1O43812 170 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 ZBTB11O95625 1053 aaPredicted RBP13.46□□□□□ -0.26
USP39-207ENST00000450066 C9P02748 559 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 ALPPL2P10696 532 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 ACADSP16219 412 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 ATP6V1C1P21283 382 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 MLLT3P42568 568 aaPredicted RBP13.46□□□□□ -0.26
USP39-207ENST00000450066 GABRA4P48169 554 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 CCT3P49368 545 aaKnown RBP13.46□□□□□ -0.26
USP39-207ENST00000450066 PRIM2P49643 509 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 ATP6AP1Q15904 470 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 ZNF528Q3MIS6 628 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 OR52E8Q6IFG1 317 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 TMEM64Q6YI46 380 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 PRSS41Q7RTY9 318 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 PLXDC1Q8IUK5 500 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 SAMD14Q8IZD0 417 aaPredicted RBP13.46□□□□□ -0.26
USP39-207ENST00000450066 CEP76Q8TAP6 659 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 MAL2Q969L2 176 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 EME1Q96AY2 570 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 CENPNQ96H22 339 aaPredicted RBP13.46□□□□□ -0.26
USP39-207ENST00000450066 C10orf90Q96M02 699 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 ZNF681Q96N22 645 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 NPLQ9BXD5 320 aaPredicted RBP13.46□□□□□ -0.26
USP39-207ENST00000450066 SEMA3GQ9NS98 782 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 CNOT11Q9UKZ1 510 aaKnown RBP13.46□□□□□ -0.26
USP39-207ENST00000450066 PLCL2Q9UPR0 1127 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 SPACA6W5XKT8 324 aa13.46□□□□□ -0.26
USP39-207ENST00000450066 B4GAT1O43505 415 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 DNAJB6O75190 326 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 CFIP05156 583 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 CTSBP07858 339 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 GPC1P35052 558 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 CASP9P55211 416 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 ZNF630Q2M218 657 aaPredicted RBP13.45□□□□□ -0.26
USP39-207ENST00000450066 SFT2D3Q587I9 215 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 C6orf120Q7Z4R8 191 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 CCDC116Q8IYX3 515 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 OR4C6Q8NH72 309 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 SLC47A1Q96FL8 570 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 PYURFQ96I23 114 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 TMEM121BQ9BXQ6 578 aaPredicted RBP13.45□□□□□ -0.26
USP39-207ENST00000450066 ANKHQ9HCJ1 492 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 SOHLH2Q9NX45 425 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 RPS6KA6Q9UK32 745 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 PI4KAP42356 2102 aa13.45□□□□□ -0.26
USP39-207ENST00000450066 ZNF860A6NHJ4 632 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 PNLIPP16233 465 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 FEN1P39748 380 aaKnown RBP13.44□□□□□ -0.26
USP39-207ENST00000450066 CCT8P50990 548 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 OLR1P78380 273 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 NKG7Q16617 165 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 ZNF750Q32MQ0 723 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 LRRC23Q53EV4 343 aaPredicted RBP13.44□□□□□ -0.26
USP39-207ENST00000450066 NIPAL1Q6NVV3 410 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 GATAD2AQ86YP4 633 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 ICA1LQ8NDH6 482 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 OR6C4Q8NGE1 309 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 NAF1Q96HR8 494 aaKnown RBP13.44□□□□□ -0.26
USP39-207ENST00000450066 CSF3RQ99062 836 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 VCXQ9H320 206 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 CAPN10Q9HC96 672 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 FSCN3Q9NQT6 498 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 SCN3AQ9NY46 2000 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 WDFY4Q6ZS81 3184 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 MN1Q10571 1320 aaPredicted RBP13.44□□□□□ -0.26
USP39-207ENST00000450066 FAM149AA5PLN7 773 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 B4GALT2O60909 372 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 LDLRP01130 860 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 C8orf89P0DMQ9 161 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 CD1CP29017 333 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 MAGEA8P43361 318 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 AQP4P55087 323 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 DSTNP60981 165 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 SKP1P63208 163 aa13.44□□□□□ -0.26
USP39-207ENST00000450066 CFHR1Q03591 330 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms