RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 CDKL1Q00532 357 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 STX4Q12846 297 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 DUSP8Q13202 625 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 SERTAD2Q14140 314 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 CRYMQ14894 314 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 FBXW10Q5XX13 1052 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 TTC27Q6P3X3 843 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 C9orf40Q8IXQ3 194 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 LRRC75A-AS1Q8N1F1 130 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 RASGEF1CQ8N431 466 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 NAT8LQ8N9F0 302 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 NANOS1Q8WY41 292 aaKnown RBP13.22□□□□□ -0.29
HMGN1-208ENST00000443046 ANKRD9Q96BM1 317 aaPredicted RBP13.22□□□□□ -0.29
HMGN1-208ENST00000443046 SPACA9Q96E40 222 aaPredicted RBP13.22□□□□□ -0.29
HMGN1-208ENST00000443046 PIP5K1AQ99755 562 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 WDR83Q9BRX9 315 aaKnown RBP13.22□□□□□ -0.29
HMGN1-208ENST00000443046 REXO4Q9GZR2 422 aaKnown RBP13.22□□□□□ -0.29
HMGN1-208ENST00000443046 EPB41L4BQ9H329 900 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 CNIH4Q9P003 139 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 CNOT11Q9UKZ1 510 aaKnown RBP13.22□□□□□ -0.29
HMGN1-208ENST00000443046 IKBKGQ9Y6K9 419 aa13.22□□□□□ -0.29
HMGN1-208ENST00000443046 MBD3L4A6NDZ8 208 aaPredicted RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 MBD3L3A6NE82 208 aaPredicted RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 MBD3L5A6NJ08 208 aaPredicted RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 CD8B2A6NJW9 211 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 ARHGEF9O43307 516 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 LDB3O75112 727 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 TRIM3O75382 744 aaPredicted RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 IL18BPO95998 194 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 FBXO45P0C2W1 286 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 CTSSP25774 331 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 SLC6A12P48065 614 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 TRPC1P48995 793 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 KCNJ2P63252 427 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 PDAP1Q13442 181 aaKnown RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 RCN2Q14257 317 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 NHSL2Q5HYW2 709 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 Q5PR19 223 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 PRAMEF20Q5VT98 475 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 TRIM40Q6P9F5 258 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 PRSS57Q6UWY2 283 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 DND1Q8IYX4 353 aaKnown RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 MBD3L2Q8NHZ7 208 aaPredicted RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 SMPDL3BQ92485 455 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 ANKRD7Q92527 254 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 SENP5Q96HI0 755 aaPredicted RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 DACH2Q96NX9 599 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 REPIN1Q9BWE0 567 aaKnown RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 PITHD1Q9GZP4 211 aaPredicted RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 UBQLN3Q9H347 655 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 LYRM4Q9HD34 91 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 RYDENQ9NUL5 291 aaKnown RBP13.21□□□□□ -0.29
HMGN1-208ENST00000443046 COPS7AQ9UBW8 275 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 ADAM21Q9UKJ8 722 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 GUCA1BQ9UMX6 200 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 VWA7Q9Y334 891 aa13.21□□□□□ -0.29
HMGN1-208ENST00000443046 ANKRD33BA6NCL7 494 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 H2AFYO75367 372 aaKnown RBP13.2□□□□□ -0.3
HMGN1-208ENST00000443046 HPNP05981 417 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 PGAM1P18669 254 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 TNNI3P19429 210 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 PCSK6P29122 969 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 HPDP32754 393 aaPredicted RBP13.2□□□□□ -0.3
HMGN1-208ENST00000443046 OPRM1P35372 400 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 HNMTP50135 292 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 SLBPQ14493 270 aaKnown RBP eCLIP13.2□□□□□ -0.3
HMGN1-208ENST00000443046 VASNQ6EMK4 673 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 ZNF793Q6ZN11 406 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 CAPN12Q6ZSI9 719 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 UBE3DQ7Z6J8 389 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 PM20D2Q8IYS1 436 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 LIX1Q8N485 282 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 C7orf57Q8NEG2 295 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 OR10G3Q8NGC4 313 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 SLC22A8Q8TCC7 542 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 HSPBAP1Q96EW2 488 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 MAPKAP1Q9BPZ7 522 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 YIPF4Q9BSR8 244 aa13.2□□□□□ -0.3
HMGN1-208ENST00000443046 ZNF490Q9ULM2 529 aaPredicted RBP13.2□□□□□ -0.3
HMGN1-208ENST00000443046 C15orf38-AP3S2A0A0A6YYH1 394 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 H7C1Q1 480 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 HRKO00198 91 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 CDC7O00311 574 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 PRAMEF4O60810 478 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 GDF5P43026 501 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 STT3AP46977 705 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 AGFG1P52594 562 aaKnown RBP13.19□□□□□ -0.3
HMGN1-208ENST00000443046 SF3B4Q15427 424 aaKnown RBP eCLIP13.19□□□□□ -0.32e-7■■■■□ 20.5
HMGN1-208ENST00000443046 C18orf21Q32NC0 220 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-208ENST00000443046 TEDDM1Q5T9Z0 273 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 PRAMEF9Q5VWM5 478 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 ADNP2Q6IQ32 1131 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 DGAT2L6Q6ZPD8 337 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 KRT78Q8N1N4 520 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 SIMC1Q8NDZ2 872 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 GABPB2Q8TAK5 448 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-208ENST00000443046 CCT6BQ92526 530 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 ZNF592Q92610 1267 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 NTNG2Q96CW9 530 aa13.19□□□□□ -0.3
HMGN1-208ENST00000443046 RUNDC3BQ96NL0 473 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms