RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 VSX2P58304 361 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-207ENST00000436724 VEZF1Q14119 521 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 VTCN1Q7Z7D3 282 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 SMIM10Q96HG1 83 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 PYURFQ96I23 114 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 AMDHD1Q96NU7 426 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 SEMA6CQ9H3T2 930 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 OLAHQ9NV23 265 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 SCN2AQ99250 2005 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 PCDH15Q96QU1 1955 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 WDR87Q6ZQQ6 2873 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 ACOX3O15254 700 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 GCM2O75603 506 aaPredicted RBP19.96■□□□□ 0.79
PTPRF-207ENST00000436724 FEN1P39748 380 aaKnown RBP19.96■□□□□ 0.79
PTPRF-207ENST00000436724 NCBP2P52298 156 aaKnown RBP eCLIP19.96■□□□□ 0.792e-6■■□□□ 12.6
PTPRF-207ENST00000436724 TMEM214Q6NUQ4 689 aaKnown RBP19.96■□□□□ 0.79
PTPRF-207ENST00000436724 FAM92BQ6ZTR7 304 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 C17orf82Q86X59 251 aaPredicted RBP19.96■□□□□ 0.79
PTPRF-207ENST00000436724 NATD1Q8N6N6 113 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 AVL9Q8NBF6 648 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 C11orf65Q8NCR3 313 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 KLHL6Q8WZ60 621 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 MAP3K3Q99759 626 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 NEUROD4Q9HD90 331 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 CES1P1Q9UKY3 287 aa19.96■□□□□ 0.79
PTPRF-207ENST00000436724 SLC9B1P1A6NJY1 282 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 UPK1AO00322 258 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 GUCY1B2O75343 617 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 PROS1P07225 676 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 CAPZBP47756 277 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 DHPSP49366 369 aaPredicted RBP19.95■□□□□ 0.78
PTPRF-207ENST00000436724 PRIM2P49643 509 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 IST1P53990 364 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 SUZ12Q15022 739 aaKnown RBP19.95■□□□□ 0.78
PTPRF-207ENST00000436724 C11orf91Q3C1V1 193 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 SLC48A1Q6P1K1 146 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 CCDC116Q8IYX3 515 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 THAP11Q96EK4 314 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 BBS4Q96RK4 519 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 SPATA9Q9BWV2 254 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 ACSS1Q9NUB1 689 aaPredicted RBP19.95■□□□□ 0.78
PTPRF-207ENST00000436724 SAMD4AQ9UPU9 718 aaKnown RBP19.95■□□□□ 0.78
PTPRF-207ENST00000436724 TMEM131Q92545 1883 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 SPTBP11277 2137 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 DLGAP1O14490 977 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 FKBP9O95302 570 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 KRT75O95678 551 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 PCGF2P35227 344 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 RELAQ04206 551 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 VAC14Q08AM6 782 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 PPP1R8Q12972 351 aaKnown RBP19.95■□□□□ 0.78
PTPRF-207ENST00000436724 FADDQ13158 208 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 DYNC1I2Q13409 638 aaKnown RBP19.95■□□□□ 0.78
PTPRF-207ENST00000436724 RUNX2Q13950 521 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 SPDYE7PQ495Y7 208 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 GCNT6Q5T4J0 391 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 TNFAIP8L2Q6P589 184 aaPredicted RBP19.95■□□□□ 0.78
PTPRF-207ENST00000436724 SZRD1Q7Z422 152 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 NFKBIDQ8NI38 313 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 SUN3Q8TAQ9 357 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 MAGED1Q9Y5V3 778 aaPredicted RBP19.95■□□□□ 0.78
PTPRF-207ENST00000436724 TECTAO75443 2155 aa19.95■□□□□ 0.78
PTPRF-207ENST00000436724 CST1P01037 141 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 ZNF23P17027 643 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 DDX5P17844 614 aaKnown RBP19.94■□□□□ 0.78
PTPRF-207ENST00000436724 NELFEP18615 380 aaKnown RBP19.94■□□□□ 0.78
PTPRF-207ENST00000436724 NR1H2P55055 460 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 TP53BP2Q13625 1128 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 SPIDRQ14159 915 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.94■□□□□ 0.78
PTPRF-207ENST00000436724 NKAIN2Q5VXU1 208 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 SAXO2Q658L1 398 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 TBPL2Q6SJ96 375 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 MAMSTRQ6ZN01 415 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 SLC25A45Q8N413 288 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 CSNK1A1LQ8N752 337 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 C19orf47Q8N9M1 422 aaKnown RBP19.94■□□□□ 0.78
PTPRF-207ENST00000436724 TFAP2CQ92754 450 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 NEURL3Q96EH8 262 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 MAGED4Q96JG8 741 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 CSF3RQ99062 836 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 IER2Q9BTL4 223 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 BDH2Q9BUT1 245 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 LYARQ9NX58 379 aaKnown RBP19.94■□□□□ 0.78
PTPRF-207ENST00000436724 KCMF1Q9P0J7 381 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 CACNA1EQ15878 2313 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 URADA6NGE7 173 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 H3BNH8 94 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 DEAF1O75398 565 aaPredicted RBP19.94■□□□□ 0.78
PTPRF-207ENST00000436724 H6PDO95479 791 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 OPN1SWP03999 348 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 MYF5P13349 255 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 ALOX12P18054 663 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 ALDH4A1P30038 563 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 GPC1P35052 558 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 CCT3P49368 545 aaKnown RBP19.94■□□□□ 0.78
PTPRF-207ENST00000436724 GFERP55789 205 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 SCARB2Q14108 478 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 C14orf28Q4W4Y0 310 aa19.94■□□□□ 0.78
PTPRF-207ENST00000436724 INTS11Q5TA45 600 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms