RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 EPORP19235 508 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 ACVR2AP27037 513 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 MSX1P28360 303 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 SPRP35270 261 aaPredicted RBP13.42□□□□□ -0.26
SDC1-204ENST00000429035 PIGAP37287 484 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 PLIN5Q00G26 463 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 ZKSCAN8Q15776 578 aaPredicted RBP13.42□□□□□ -0.26
SDC1-204ENST00000429035 GXYLT1Q4G148 440 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 CDKL4Q5MAI5 379 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 B3GNT6Q6ZMB0 384 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 CHSY3Q70JA7 882 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 TRILQ7L0X0 811 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 LILRB4Q8NHJ6 448 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 ZNF721Q8TF20 911 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 ANKRD9Q96BM1 317 aaPredicted RBP13.42□□□□□ -0.26
SDC1-204ENST00000429035 PPWD1Q96BP3 646 aaKnown RBP13.42□□□□□ -0.26
SDC1-204ENST00000429035 JSRP1Q96MG2 331 aaPredicted RBP13.42□□□□□ -0.26
SDC1-204ENST00000429035 CENPKQ9BS16 269 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 ATG4BQ9Y4P1 393 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 CELSR1Q9NYQ6 3014 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 FAM187AA6NFU0 413 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 FAM159BA6NKW6 160 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 K7EPI3 171 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 EIF3HO15372 352 aaKnown RBP eCLIP13.41□□□□□ -0.26
SDC1-204ENST00000429035 RAD51CO43502 376 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 OR10H2O60403 315 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 TOXO94900 526 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 GLSO94925 669 aaPredicted RBP13.41□□□□□ -0.26
SDC1-204ENST00000429035 ZWINTO95229 277 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 ARL1P40616 181 aaPredicted RBP13.41□□□□□ -0.26
SDC1-204ENST00000429035 STT3AP46977 705 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 KCNJ2P63252 427 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 TNFRSF17Q02223 184 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 FOLH1Q04609 750 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 TFF3Q07654 80 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 SLAMF1Q13291 335 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 TBCCQ15814 346 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 TMEM35AQ53FP2 167 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 WLSQ5T9L3 541 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 GRHL2Q6ISB3 625 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 C3orf62Q6ZUJ4 267 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 WDR53Q7Z5U6 358 aaPredicted RBP13.41□□□□□ -0.26
SDC1-204ENST00000429035 C9orf40Q8IXQ3 194 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 TEX9Q8N6V9 391 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 FAM13CQ8NE31 585 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 OR8K3Q8NH51 312 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 STAG3L4Q8TBR4 150 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 CMTM7Q96FZ5 175 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 ART5Q96L15 291 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 SGCZQ96LD1 299 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 WHRNQ9P202 907 aa13.41□□□□□ -0.26
SDC1-204ENST00000429035 TRGV5A0A0B4J1U4 118 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 OR14I1A6ND48 311 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 HRKO00198 91 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 AQP7O14520 342 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 KERAO60938 352 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 LTA4HP09960 611 aaKnown RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 GFAPP14136 432 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 IGFBP2P18065 325 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 HERVK_113P63132 956 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 ERVK-8P63133 956 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 PHEXP78562 749 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 DLG1Q12959 904 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 KBTBD12Q3ZCT8 623 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 C1orf185Q5T7R7 199 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 GRTP1Q5TC63 336 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 KHDRBS2Q5VWX1 349 aaKnown RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 C18orf63Q68DL7 685 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 SLC29A4Q7RTT9 530 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 DMRTC2Q8IXT2 367 aaPredicted RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 CLYBLQ8N0X4 340 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 LIX1Q8N485 282 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 ACBD4Q8NC06 268 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 OR7G3Q8NG95 312 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 NUBPLQ8TB37 319 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 SARAFQ96BY9 339 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 MRRFQ96E11 262 aaKnown RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 MTERF1Q99551 399 aaKnown RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 TREX2Q9BQ50 279 aaPredicted RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 ERP44Q9BS26 406 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 TTYH2Q9BSA4 534 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 ERVK-6Q9BXR3 956 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 RPF2Q9H7B2 306 aaKnown RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 NMRAL1Q9HBL8 299 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 SEMA4BQ9NPR2 832 aaPredicted RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 DMRT3Q9NQL9 472 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 PHF11Q9UIL8 331 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 BOKQ9UMX3 212 aaPredicted RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 ERVK-19Q9WJR5 959 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 FAM215AQ9Y5M1 114 aa13.4□□□□□ -0.26
SDC1-204ENST00000429035 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.4□□□□□ -0.26
SDC1-204ENST00000429035 A0A0G2JNJ9 132 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 IQANK1A0A1B0GTG1 560 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 SCELO95171 688 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 IGHG3P01860 377 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 SLC35E2BP0CK96 405 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 GLI4P10075 376 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 ALOX15P16050 662 aaPredicted RBP13.39□□□□□ -0.27
SDC1-204ENST00000429035 EPB42P16452 691 aa13.39□□□□□ -0.27
SDC1-204ENST00000429035 SERPINB1P30740 379 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms