RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MAPKAPK3Q16644 382 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 SYT16Q17RD7 645 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 C18orf63Q68DL7 685 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 BHLHB9Q6PI77 547 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 QSOX2Q6ZRP7 698 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 PRSS58Q8IYP2 241 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 LRRC25Q8N386 305 aaPredicted RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 PIP4P2Q8N4L2 257 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 AMER3Q8N944 861 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 SPDL1Q96EA4 605 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 EGLN2Q96KS0 407 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 SCNM1Q9BWG6 230 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 RBCK1Q9BYM8 510 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 CLMPQ9H6B4 373 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 SEMA3GQ9NS98 782 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 GID8Q9NWU2 228 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 TEX10Q9NXF1 929 aaPredicted RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 NDE1Q9NXR1 346 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 FOXJ2Q9P0K8 574 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 LEF1Q9UJU2 399 aaPredicted RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 FARSAQ9Y285 508 aaKnown RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 NDUFAF1Q9Y375 327 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 MSRB2Q9Y3D2 182 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 PTRH2Q9Y3E5 179 aaKnown RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 CCDC88CQ9P219 2028 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 A0A1W2PRB8 838 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 GABRR3A8MPY1 467 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 CDRT15L2A8MXV6 281 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 CYR61O00622 381 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 SLITRK5O94991 958 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 ESRRAP11474 423 aaPredicted RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 NCBP2P52298 156 aaKnown RBP eCLIP9.5□□□□□ -0.89
CD44-207ENST00000425428 MC1RQ01726 317 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 SPDYE7PQ495Y7 208 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 VWA2Q5GFL6 755 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 C6orf10Q5SRN2 563 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 CLNKQ7Z7G1 428 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 RAB43Q86YS6 212 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 KRTCAP2Q8N6L1 136 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 SLC38A9Q8NBW4 561 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 OR7A2PQ8NGA2 310 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 OR8J2Q8NGG1 315 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 ART5Q96L15 291 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 ALOXE3Q9BYJ1 711 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 SOX17Q9H6I2 414 aaPredicted RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 GPN2Q9H9Y4 310 aaPredicted RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 EFCAB1Q9HAE3 211 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 C3orf14Q9HBI5 128 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 NEUROD4Q9HD90 331 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.5□□□□□ -0.89
CD44-207ENST00000425428 TAS2R7Q9NYW3 318 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 ARMCX1Q9P291 453 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 C3orf18Q9UK00 162 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 CLCA3PQ9Y6N3 262 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 SDK2Q58EX2 2172 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 IGLV3-12A0A075B6K2 115 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 PRSS51A0A1B0GVH4 220 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 A0A1W2PP18 115 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 RNASET2O00584 256 aaKnown RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 PEX12O00623 359 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 LDB3O75112 727 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 BCAS2O75934 225 aaPredicted RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 ATP5HO75947 161 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 KCNH1O95259 989 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 MED26O95402 600 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 C8orf89P0DMQ9 161 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 NT5EP21589 574 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 ANXA11P50995 505 aaKnown RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 AP2B1P63010 937 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 FOLH1Q04609 750 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 DNASE1L3Q13609 305 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 ERV3-1Q14264 604 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 TERF2Q15554 542 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 NKG7Q16617 165 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 TBC1D25Q3MII6 688 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 TIGD2Q4W5G0 525 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 BLOC1S3Q6QNY0 202 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 CCDC121Q6ZUS5 278 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 MED25Q71SY5 747 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 CAMKMTQ7Z624 323 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 ZC3H7AQ8IWR0 971 aaKnown RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 ENDOVQ8N8Q3 282 aaKnown RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 ZSCAN1Q8NBB4 408 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 PLPP5Q8NEB5 264 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 OR4A15Q8NGL6 344 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 DNAJB14Q8TBM8 379 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 DAZLQ92904 295 aaKnown RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 FGF11Q92914 225 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 COQ8BQ96D53 544 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 RNF31Q96EP0 1072 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 IP6K3Q96PC2 410 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 PANX1Q96RD7 426 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 CSF3RQ99062 836 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 ACSS1Q9NUB1 689 aaPredicted RBP9.5□□□□□ -0.89
CD44-207ENST00000425428 CTSFQ9UBX1 484 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 TAGLN3Q9UI15 199 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 CROTQ9UKG9 612 aa9.5□□□□□ -0.89
CD44-207ENST00000425428 KLK13Q9UKR3 277 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms