RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 EFL1Q7Z2Z2 1120 aaKnown RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 PCGF5Q86SE9 256 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 TRIM74Q86UV6 250 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 TMPRSS12Q86WS5 348 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 SLC35F3Q8IY50 421 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 CHCHD4Q8N4Q1 142 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 PPHLN1Q8NEY8 458 aaKnown RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 OR13C4Q8NGS5 318 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 CCL4L1Q8NHW4 92 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 BCAS4Q8TDM0 211 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 SH3KBP1Q96B97 665 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 DCUN1D1Q96GG9 259 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 DNAJC1Q96KC8 554 aaKnown RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 CAPZA3Q96KX2 299 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 COPS8Q99627 209 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 TIMM29Q9BSF4 260 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 TUBB2BQ9BVA1 445 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 KIFC1Q9BW19 673 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 IL22Q9GZX6 179 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 DDX47Q9H0S4 455 aaKnown RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 ABCG4Q9H172 646 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 DPEP2Q9H4A9 486 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 MRM3Q9HC36 420 aaKnown RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 Q9N2J8 555 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 SPATS2LQ9NUQ6 558 aaKnown RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 SMARCAL1Q9NZC9 954 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 TAAR2Q9P1P5 351 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 CRLS1Q9UJA2 301 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 NEUROG3Q9Y4Z2 214 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 U3KQA8 63 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 SHROOM3Q8TF72 1996 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 PCNX2A6NKB5 2137 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ASCC3Q8N3C0 2202 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 PLXNA2O75051 1894 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 IGLV3-16A0A075B6K0 115 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 A0A0G2JNG1 304 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 FAM237BA0A1B0GVD1 139 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CCDC162PA2VCL2 907 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 MGAT4DA6NG13 374 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 DNALI1O14645 258 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 NUDT21O43809 227 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 POP7O75817 140 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SYF2O95926 243 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ATP1B2P14415 290 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 XRCC1P18887 633 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 IVDP26440 423 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 AK4P27144 223 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 PRAMEP78395 509 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 DR1Q01658 176 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 DMPKQ09013 629 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 TBL3Q12788 808 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 DNAJC3Q13217 504 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 DHX34Q14147 1143 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 KIR2DS5Q14953 304 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 BCL7AQ4VC05 210 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ALG10Q5BKT4 473 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ALG10BQ5I7T1 473 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF449Q6P9G9 518 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 AFTPHQ6ULP2 937 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ABRAXAS1Q6UWZ7 409 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 MAATS1Q7Z4T9 603 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ZSCAN2Q7Z7L9 614 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SLC9B2Q86UD5 537 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 HOOK3Q86VS8 718 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 AMZ2Q86W34 360 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SERPINA9Q86WD7 417 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF547Q8IVP9 402 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 KLHL7Q8IXQ5 586 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 LMNTD2Q8IXW0 634 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 NAGSQ8N159 534 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 C17orf53Q8N3J3 647 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ARL14Q8N4G2 192 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 RASGEF1AQ8N9B8 481 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 NAT8LQ8N9F0 302 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 BBOF1Q8ND07 529 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 OR4L1Q8NH43 312 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 TRIM44Q96DX7 344 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 LINC00615Q96LM1 132 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CCM2Q9BSQ5 444 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 POLDIP3Q9BY77 421 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SUDS3Q9H7L9 328 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 MAP6D1Q9H9H5 199 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CHRAC1Q9NRG0 131 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 DECR2Q9NUI1 292 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 PLEKHB1Q9UF11 243 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ANAPC5Q9UJX4 755 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ANGPTL2Q9UKU9 493 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ACSL5Q9ULC5 683 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 DOCK9Q9BZ29 2069 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CEP250Q9BV73 2442 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 A0A0A0MQY5 61 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 A6NCN8 305 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CCL22O00626 93 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 NTN3O00634 580 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 PFDN6O15212 129 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 B4GAT1O43505 415 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 MTX2O75431 263 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 TOMM40O96008 361 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 GOT2P00505 430 aaKnown RBP2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms