RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ALG9Q9H6U8 611 aa11.99□□□□□ -0.49
LINC00339-202ENST00000416769 PNO1Q9NRX1 252 aaKnown RBP11.99□□□□□ -0.49
LINC00339-202ENST00000416769 KLF13Q9Y2Y9 288 aaPredicted RBP11.99□□□□□ -0.49
LINC00339-202ENST00000416769 PLLPQ9Y342 182 aa11.99□□□□□ -0.49
LINC00339-202ENST00000416769 OARD1Q9Y530 152 aa11.99□□□□□ -0.49
LINC00339-202ENST00000416769 FLNAP21333 2647 aaKnown RBP11.98□□□□□ -0.49
LINC00339-202ENST00000416769 MPDZO75970 2070 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 PABPN1LA6NDY0 278 aaKnown RBP11.98□□□□□ -0.49
LINC00339-202ENST00000416769 NPEPPSL1A6NEC2 478 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 SYCE1LA8MT33 242 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 KERAO60938 352 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 SPAG7O75391 227 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 OR6B1O95007 311 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 SMIM10L1P0DMW3 83 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 IL10P22301 178 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 JAK1P23458 1154 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 CHRNB4P30926 498 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 GRK3P35626 688 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 GPR143P51810 404 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 AP1S2P56377 157 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 REEP5Q00765 189 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 MYBPHQ13203 477 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 TGFBIQ15582 683 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 PPP1R3AQ16821 1122 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 KRTAP21-3Q3LHN1 58 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 HSP90B2PQ58FF3 399 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 TOR1AIP1Q5JTV8 583 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 RTL6Q6ICC9 239 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 ADNP2Q6IQ32 1131 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 GPSM1Q86YR5 675 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 B3GNT7Q8NFL0 401 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 TCP10LQ8TDR4 215 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 RND1Q92730 232 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 SMIM10Q96HG1 83 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 ZNF559Q9BR84 538 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 SARGQ9BW04 601 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 SLC6A16Q9GZN6 736 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 IQCGQ9H095 443 aaKnown RBP11.98□□□□□ -0.49
LINC00339-202ENST00000416769 MED4Q9NPJ6 270 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 PRDM9Q9NQV7 894 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 CCM2LQ9NUG4 571 aaPredicted RBP11.98□□□□□ -0.49
LINC00339-202ENST00000416769 ARL15Q9NXU5 204 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 ZFP69BQ9UJL9 534 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 RNF112Q9ULX5 631 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 TMCO1Q9UM00 188 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 FAM215AQ9Y5M1 114 aa11.98□□□□□ -0.49
LINC00339-202ENST00000416769 NIPBLQ6KC79 2804 aaeCLIP11.98□□□□□ -0.49
LINC00339-202ENST00000416769 FCHO1O14526 889 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 TM9SF1O15321 606 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 PLIN3O60664 434 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 OR2J2O76002 312 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 HOXD4P09016 255 aaPredicted RBP11.97□□□□□ -0.49
LINC00339-202ENST00000416769 FREM3P0C091 2139 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 SBK3P0C264 359 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 RNH1P13489 461 aaKnown RBP11.97□□□□□ -0.49
LINC00339-202ENST00000416769 ADH7P40394 386 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 SOX3P41225 446 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 BTN3A2P78410 334 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 PWP1Q13610 501 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 ZNF750Q32MQ0 723 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 GXYLT1Q4G148 440 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 FRA10AC1Q70Z53 315 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 TMPRSS11BQ86T26 416 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 SCUBE1Q8IWY4 988 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.97□□□□□ -0.49
LINC00339-202ENST00000416769 TMEM156Q8N614 296 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 FAM47BQ8NA70 645 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 POGLUT1Q8NBL1 392 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 PSD4Q8NDX1 1056 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 OR5M3Q8NGP4 307 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 CREB3L4Q8TEY5 395 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 SLC5A11Q8WWX8 675 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 CSF3RQ99062 836 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 CNPPD1Q9BV87 410 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 TP63Q9H3D4 680 aaPredicted RBP11.97□□□□□ -0.49
LINC00339-202ENST00000416769 KCNK9Q9NPC2 374 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 KCNJ16Q9NPI9 418 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 SEMA4BQ9NPR2 832 aaPredicted RBP11.97□□□□□ -0.49
LINC00339-202ENST00000416769 NUDT4Q9NZJ9 180 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 MID2Q9UJV3 735 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 EMCNQ9ULC0 261 aa11.97□□□□□ -0.49
LINC00339-202ENST00000416769 A0A0G2JNJ9 132 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 KLRC4-KLRK1H3BQV0 150 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 WWP2O00308 870 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 KLK8O60259 260 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 ZWINTO95229 277 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 TBX6O95947 436 aaPredicted RBP11.96□□□□□ -0.49
LINC00339-202ENST00000416769 PROCP04070 461 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 GLI4P10075 376 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 MTHFD2P13995 350 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 CD99P14209 185 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 CD1EP15812 388 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 TAC1P20366 129 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 HNRNPH1P31943 449 aaKnown RBP11.96□□□□□ -0.49
LINC00339-202ENST00000416769 HNMTP50135 292 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 CLCN2P51788 898 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 PPIAP62937 165 aaKnown RBP11.96□□□□□ -0.49
LINC00339-202ENST00000416769 RGS1Q08116 209 aa11.96□□□□□ -0.49
LINC00339-202ENST00000416769 RBBP5Q15291 538 aaKnown RBP11.96□□□□□ -0.49
LINC00339-202ENST00000416769 SULT1C3Q6IMI6 304 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms