RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ALBP02768 609 aa17■□□□□ 0.31
SDC1-203ENST00000403076 ESRRAP11474 423 aaPredicted RBP17■□□□□ 0.31
SDC1-203ENST00000403076 CAPN3P20807 821 aa17■□□□□ 0.31
SDC1-203ENST00000403076 EFNA1P20827 205 aaPredicted RBP17■□□□□ 0.31
SDC1-203ENST00000403076 PRDX6P30041 224 aa17■□□□□ 0.31
SDC1-203ENST00000403076 NTSP30990 170 aa17■□□□□ 0.31
SDC1-203ENST00000403076 XKP51811 444 aa17■□□□□ 0.31
SDC1-203ENST00000403076 BTG2P78543 158 aa17■□□□□ 0.31
SDC1-203ENST00000403076 STX4Q12846 297 aa17■□□□□ 0.31
SDC1-203ENST00000403076 PRSS53Q2L4Q9 553 aa17■□□□□ 0.31
SDC1-203ENST00000403076 TIPARPQ7Z3E1 657 aaKnown RBP17■□□□□ 0.31
SDC1-203ENST00000403076 CAMKMTQ7Z624 323 aa17■□□□□ 0.31
SDC1-203ENST00000403076 ESX1Q8N693 406 aa17■□□□□ 0.31
SDC1-203ENST00000403076 NATD1Q8N6N6 113 aa17■□□□□ 0.31
SDC1-203ENST00000403076 TSPEARQ8WU66 669 aa17■□□□□ 0.31
SDC1-203ENST00000403076 FKBP10Q96AY3 582 aa17■□□□□ 0.31
SDC1-203ENST00000403076 ZNF764Q96H86 408 aaPredicted RBP17■□□□□ 0.31
SDC1-203ENST00000403076 NSL1Q96IY1 281 aa17■□□□□ 0.31
SDC1-203ENST00000403076 PTCHD1Q96NR3 888 aa17■□□□□ 0.31
SDC1-203ENST00000403076 SPRY4Q9C004 299 aa17■□□□□ 0.31
SDC1-203ENST00000403076 RMND5AQ9H871 391 aa17■□□□□ 0.31
SDC1-203ENST00000403076 LANCL2Q9NS86 450 aa17■□□□□ 0.31
SDC1-203ENST00000403076 C14orf105Q9NVL8 296 aa17■□□□□ 0.31
SDC1-203ENST00000403076 TAGLN3Q9UI15 199 aa17■□□□□ 0.31
SDC1-203ENST00000403076 PCDHGA7Q9Y5G6 932 aa17■□□□□ 0.31
SDC1-203ENST00000403076 CROCCQ5TZA2 2017 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 SCN2AQ99250 2005 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 MYOCOSA0A1B0GUC4 107 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 A0A1W2PP18 115 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 OR2W5A6NFC9 320 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 FGF17O60258 216 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 GPR75O95800 540 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 ZGLP1P0C6A0 271 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 CSNK2A2P19784 350 aaPredicted RBP16.99■□□□□ 0.31
SDC1-203ENST00000403076 FEN1P39748 380 aaKnown RBP16.99■□□□□ 0.31
SDC1-203ENST00000403076 ID4P47928 161 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 HSD17B7P56937 341 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 PHC1P78364 1004 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 PLIN5Q00G26 463 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 FOLH1Q04609 750 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 MAPKAPK3Q16644 382 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 C6orf89Q6UWU4 347 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 SHISA6Q6ZSJ9 500 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 SAMD14Q8IZD0 417 aaPredicted RBP16.99■□□□□ 0.31
SDC1-203ENST00000403076 CIDECQ96AQ7 238 aaPredicted RBP16.99■□□□□ 0.31
SDC1-203ENST00000403076 TUBB6Q9BUF5 446 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 TGIF2Q9GZN2 237 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 SOX17Q9H6I2 414 aaPredicted RBP16.99■□□□□ 0.31
SDC1-203ENST00000403076 FAM120CQ9NX05 1096 aaKnown RBP16.99■□□□□ 0.31
SDC1-203ENST00000403076 LEF1Q9UJU2 399 aaPredicted RBP16.99■□□□□ 0.31
SDC1-203ENST00000403076 KLK13Q9UKR3 277 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 MKL2Q9ULH7 1088 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 PCDHGB4Q9UN71 923 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 DMXL1Q9Y485 3027 aa16.99■□□□□ 0.31
SDC1-203ENST00000403076 IGLV3-12A0A075B6K2 115 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 PRSS51A0A1B0GVH4 220 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 A0A1W2PRB8 838 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 STMND1H3BQB6 276 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 RAD1O60671 282 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 CBX6O95503 412 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 CPSF4O95639 269 aaKnown RBP16.98■□□□□ 0.31
SDC1-203ENST00000403076 TCN2P20062 427 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 MAOAP21397 527 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 CD82P27701 267 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 MANFP55145 182 aaKnown RBP16.98■□□□□ 0.31
SDC1-203ENST00000403076 CAMK2BQ13554 666 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 NKG7Q16617 165 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 ZNF750Q32MQ0 723 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 ANKRD46Q86W74 232 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 NLGN4XQ8N0W4 816 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 NLGN4YQ8NFZ3 816 aaPredicted RBP16.98■□□□□ 0.31
SDC1-203ENST00000403076 ANKRD9Q96BM1 317 aaPredicted RBP16.98■□□□□ 0.31
SDC1-203ENST00000403076 SLC26A1Q9H2B4 701 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 THSD1Q9NS62 852 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 MMACHCQ9Y4U1 282 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 FER1L5A0AVI2 2057 aa16.98■□□□□ 0.31
SDC1-203ENST00000403076 TRABD2BA6NFA1 517 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 BBIP1A8MTZ0 92 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 CDRT15L2A8MXV6 281 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 HEXBP07686 556 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 CD63P08962 238 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 PORP16435 677 aaPredicted RBP16.97■□□□□ 0.31
SDC1-203ENST00000403076 MPIP34949 423 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 CPA2P48052 419 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 NCBP2P52298 156 aaKnown RBP eCLIP16.97■□□□□ 0.31
SDC1-203ENST00000403076 MAP7Q14244 749 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 C6orf10Q5SRN2 563 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 SLC2A7Q6PXP3 512 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 IGF2-ASQ6U949 168 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 FAM198BQ6UWH4 519 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 ZNF517Q6ZMY9 492 aaPredicted RBP16.97■□□□□ 0.31
SDC1-203ENST00000403076 QSOX2Q6ZRP7 698 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 MSANTD1Q6ZTZ1 278 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 CCDC121Q6ZUS5 278 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 LAPTM4BQ86VI4 370 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 CCDC116Q8IYX3 515 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 ZFP28Q8NHY6 868 aa16.97■□□□□ 0.31
SDC1-203ENST00000403076 CNRIP1Q96F85 164 aaPredicted RBP16.97■□□□□ 0.31
SDC1-203ENST00000403076 ZBED6CLQ96FA7 236 aaPredicted RBP16.97■□□□□ 0.31
SDC1-203ENST00000403076 ITCHQ96J02 903 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms