RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 LIPKQ5VXJ0 399 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 IFT27Q9BW83 186 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 TMEM202A6NGA9 273 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 HIDE1A8MVS5 230 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 ZNF821O75541 412 aaPredicted RBP17.68■□□□□ 0.42
USP48-204ENST00000400301 TIMP1P01033 207 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 PPP2R2BQ00005 443 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 ZNF45Q02386 682 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 LRIF1Q5T3J3 769 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 RPL3LQ92901 407 aaKnown RBP17.68■□□□□ 0.42
USP48-204ENST00000400301 SLC22A18Q96BI1 424 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 BARD1Q99728 777 aaKnown RBP17.68■□□□□ 0.42
USP48-204ENST00000400301 NUMA1Q14980 2115 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 HMGN1P05114 100 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 PPP5CP53041 499 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 HNRNPA1L2Q32P51 320 aaKnown RBP17.68■□□□□ 0.42
USP48-204ENST00000400301 DUS1LQ6P1R4 473 aaKnown RBP17.68■□□□□ 0.42
USP48-204ENST00000400301 DPH7Q9BTV6 452 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 DPEP2Q9H4A9 486 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 PARP14Q460N5 1801 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 ADAP00813 363 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 ASGR2P07307 311 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 CEBPBP17676 345 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 GPX2P18283 190 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 LCN1P1Q5VSP4 162 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 ZNF544Q6NX49 715 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 ZNF740Q8NDX6 193 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 OR8K5Q8NH50 307 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 JPH3Q8WXH2 748 aaPredicted RBP17.68■□□□□ 0.42
USP48-204ENST00000400301 SIPA1Q96FS4 1042 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 KAT7O95251 611 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 MLLT10P55197 1068 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 HTRA3P83110 453 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 TIAL1Q01085 375 aaKnown RBP eCLIP17.68■□□□□ 0.42
USP48-204ENST00000400301 TMEM44Q2T9K0 475 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 SLCO4C1Q6ZQN7 724 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 FGD2Q7Z6J4 655 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 RIMKLAQ8IXN7 391 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 MRPL43Q8N983 215 aaKnown RBP17.68■□□□□ 0.42
USP48-204ENST00000400301 DMRTB1Q96MA1 342 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 LYSMD1Q96S90 227 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 SLITRK2Q9H156 845 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 MYNNQ9NPC7 610 aa17.68■□□□□ 0.42
USP48-204ENST00000400301 TRBV5-4A0A0C4DH59 114 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 SLC16A6O15403 523 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 SEC14L2O76054 403 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 PCDH1Q08174 1060 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 LGALS3BPQ08380 585 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 TAF8Q7Z7C8 310 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 MARCH9Q86YJ5 346 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 SMARCD2Q92925 531 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 WDR45Q9Y484 360 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 WASH3PC4AMC7 463 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 ITGB7P26010 798 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 NDUFS1P28331 727 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 SUZ12Q15022 739 aaKnown RBP17.67■□□□□ 0.42
USP48-204ENST00000400301 EIPR1Q53HC9 387 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 BBS10Q8TAM1 723 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 TRIM63Q969Q1 353 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 TIGARQ9NQ88 270 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 DNMT3BQ9UBC3 853 aaKnown RBP17.67■□□□□ 0.42
USP48-204ENST00000400301 F5P12259 2224 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 OR5F1O95221 314 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 TRAM2Q15035 370 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 C11orf91Q3C1V1 193 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 HSDL2Q6YN16 418 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 OR4C6Q8NH72 309 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 MCHR1Q99705 422 aa17.67■□□□□ 0.42
USP48-204ENST00000400301 SLCO2B1O94956 709 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 ISL1P61371 349 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 BIKQ13323 160 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 PIN1Q13526 163 aaPredicted RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 RNASE12Q5GAN4 147 aaKnown RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 KLHL36Q8N4N3 616 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 RBM18Q96H35 190 aaKnown RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 IL21Q9HBE4 155 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 ZBTB20Q9HC78 741 aaPredicted RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 C14orf119Q9NWQ9 140 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 CNTRLQ7Z7A1 2325 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 DAPL1A0PJW8 107 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 MID1O15344 667 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 ID2Q02363 134 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 PTGES3Q15185 160 aaKnown RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 KCT2Q8NC54 265 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 OR4K5Q8NGD3 323 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 EID2BQ96D98 161 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 LRR1Q96L50 414 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 TNFRSF10DQ9UBN6 386 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 MYO10Q9HD67 2058 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 AKAP8O43823 692 aaKnown RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 ERVFC1P60507 584 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 TAP2Q03519 686 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 ZNF234Q14588 700 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 NDUFAF5Q5TEU4 345 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 SLC27A4Q6P1M0 643 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 SNX29P2Q8IUI4 249 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 UBE2FQ969M7 185 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 TMED9Q9BVK6 235 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 ACTL8Q9H568 366 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 J3KTA2 159 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms