RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 B3GNTL1Q67FW5 361 aaPredicted RBP20.28■□□□□ 0.84
CLN3-207ENST00000395653 GALNT18Q6P9A2 607 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 OR4N5Q8IXE1 308 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 OR14A16Q8NHC5 309 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 DNAJB14Q8TBM8 379 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 DAZLQ92904 295 aaKnown RBP20.28■□□□□ 0.84
CLN3-207ENST00000395653 PNPLA2Q96AD5 504 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 APIPQ96GX9 242 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 ZNF354BQ96LW1 612 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 C1orf226A1L170 272 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 GLOD5A6NK44 160 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 A8MUI8 341 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 RSL1D1O76021 490 aaKnown RBP20.27■□□□□ 0.84
CLN3-207ENST00000395653 GPR75O95800 540 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 CHEK2O96017 543 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 STT3AP46977 705 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 GPR143P51810 404 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 PLIN5Q00G26 463 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 SLC6A19Q695T7 634 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 ATG14Q6ZNE5 492 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 Q6ZS92 163 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 ZNF605Q86T29 641 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 ST13P4Q8IZP2 240 aaPredicted RBP20.27■□□□□ 0.84
CLN3-207ENST00000395653 CLYBLQ8N0X4 340 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 LGI4Q8N135 537 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 SLC5A8Q8N695 610 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 APCDD1LQ8NCL9 501 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 PPP1R14CQ8TAE6 165 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 PTPMT1Q8WUK0 201 aaPredicted RBP20.27■□□□□ 0.84
CLN3-207ENST00000395653 VMP1Q96GC9 406 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 METTL2AQ96IZ6 378 aaKnown RBP20.27■□□□□ 0.84
CLN3-207ENST00000395653 PELOQ9BRX2 385 aaKnown RBP20.27■□□□□ 0.84
CLN3-207ENST00000395653 RNF32Q9H0A6 362 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 TRAF6Q9Y4K3 522 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 CCL27Q9Y4X3 112 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 PCDHA9Q9Y5H5 950 aa20.27■□□□□ 0.84
CLN3-207ENST00000395653 MYOCOSA0A1B0GUC4 107 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 WDR91A4D1P6 747 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 NPIPB8E9PQR5 432 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 PCDH7O60245 1069 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 SERPINE1P05121 402 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 COX7A2P14406 83 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 ALOX15P16050 662 aaPredicted RBP20.27■□□□□ 0.83
CLN3-207ENST00000395653 PRPH2P23942 346 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 TIA1P31483 386 aaKnown RBP eCLIP20.27■□□□□ 0.83
CLN3-207ENST00000395653 ARRB2P32121 409 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 CLCN2P51788 898 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 SLC18A1P54219 525 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 MAGOHP61326 146 aaKnown RBP20.27■□□□□ 0.83
CLN3-207ENST00000395653 RAE1P78406 368 aaKnown RBP20.27■□□□□ 0.83
CLN3-207ENST00000395653 SPDYAQ5MJ70 313 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 PRICKLE2Q7Z3G6 844 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 KIF2BQ8N4N8 673 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 MORN4Q8NDC4 146 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 TM4SF18Q96CE8 201 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 RBM18Q96H35 190 aaKnown RBP20.27■□□□□ 0.83
CLN3-207ENST00000395653 DGAT2Q96PD7 388 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 MFRPQ9BY79 579 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 B3GNT3Q9Y2A9 372 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 FIS1Q9Y3D6 152 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 DNAJC15Q9Y5T4 150 aa20.27■□□□□ 0.83
CLN3-207ENST00000395653 CPAMD8Q8IZJ3 1885 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 TMEM120BA0PK00 339 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 DYTNA2CJ06 578 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 WASHC1A8K0Z3 465 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 C17orf105B2RV13 164 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 SLC28A1O00337 649 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 SLC28A2O43868 658 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 SORBS2O94875 1100 aaKnown RBP20.26■□□□□ 0.83
CLN3-207ENST00000395653 TNNI3P19429 210 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 MEP1AQ16819 746 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 ACER2Q5QJU3 275 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 SH2D4BQ5SQS7 431 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 AGBL2Q5U5Z8 902 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 HDXQ7Z353 690 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 CRLF3Q8IUI8 442 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 HAS2Q92819 552 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 UCN3Q969E3 161 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 NCLNQ969V3 563 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 FAIM2Q9BWQ8 316 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 STMN3Q9NZ72 180 aa20.26■□□□□ 0.83
CLN3-207ENST00000395653 GNG14A0A1W2PPG7 69 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 TMEM114B3SHH9 223 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 PGRMC2O15173 223 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 RGS14O43566 566 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 NEFHP12036 1026 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 GRK2P25098 689 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 GSTM5P46439 218 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 ARG2P78540 354 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 BTKQ06187 659 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 CHI3L2Q15782 390 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 UGT3A2Q3SY77 523 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 COLEC12Q5KU26 742 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 SLC48A1Q6P1K1 146 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 ARMC10Q8N2F6 343 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 ANKRD42Q8N9B4 389 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 FAM76AQ8TAV0 307 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 NPAS2Q99743 824 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 DEFB126Q9BYW3 111 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 EPN3Q9H201 632 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms