RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LSSP48449 732 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 ESRRGP62508 458 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 ADARB1P78563 741 aaKnown RBP17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 ZNF385BQ569K4 471 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 ZNF793Q6ZN11 406 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 PLXDC1Q8IUK5 500 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC25A45Q8N413 288 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 FIG4Q92562 907 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 FAM162AQ96A26 154 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 TPT1P8Q9HAU6 139 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 DCAF13Q9NV06 445 aaKnown RBP17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 USE1Q9NZ43 259 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 USP22Q9UPT9 525 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 ENTPD4Q9Y227 616 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 RNF215Q9Y6U7 377 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 A0A0G2JN53 185 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 ZNF701M0R085 212 aaPredicted RBP17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 CER1O95813 267 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 ALBP02768 609 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 STATHP02808 62 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 CFIP05156 583 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 EIF2S1P05198 315 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 ST6GAL1P15907 406 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 ALOX12P18054 663 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 GPX2P18283 190 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 GZMMP51124 257 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 ARSFP54793 590 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 MANFP55145 182 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 BNIP3Q12983 259 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 NR1D2Q14995 579 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 MLC1Q15049 377 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 NDUFA9Q16795 377 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 GTDC1Q4AE62 458 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 CYBRD1Q53TN4 286 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 ZDHHC13Q8IUH4 622 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 TBC1D20Q96BZ9 403 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC47A1Q96FL8 570 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 AURKBQ96GD4 344 aaPredicted RBP17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 AICDAQ9GZX7 198 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 KLHL25Q9H0H3 589 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 PIF1Q9H611 641 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 NTN4Q9HB63 628 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 IL21RQ9HBE5 538 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 TMEM74BQ9NUR3 256 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 ASB4Q9Y574 426 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC22A7Q9Y694 548 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 TMEM131Q92545 1883 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 VCANP13611 3396 aa17.23■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC9B1P1A6NJY1 282 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 UPK1AO00322 258 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 CREG1O75629 220 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 C6orf47O95873 294 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 SYPP08247 313 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 PNLIPP16233 465 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 UQCRC2P22695 453 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 CERS1P27544 350 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 ALDH4A1P30038 563 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 MLLT3P42568 568 aaPredicted RBP17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 VAC14Q08AM6 782 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 TTC23Q5W5X9 447 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 BMP8AQ7Z5Y6 402 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 KCT2Q8NC54 265 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 MAGEE2Q8TD90 523 aaPredicted RBP17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 CYGBQ8WWM9 190 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 FCRL4Q96PJ5 515 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 MACROD1Q9BQ69 325 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 LYRM4Q9HD34 91 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 PDE7BQ9NP56 450 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 TEX10Q9NXF1 929 aaPredicted RBP17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 UTS2RQ9UKP6 389 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 TRIOO75962 3097 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 KNL1Q8NG31 2342 aa17.22■□□□□ 0.35
CCDC88C-203ENST00000389856 PLOD2O00469 737 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 OR6B1O95007 311 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ZBTB11O95625 1053 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ABCB1P08183 1280 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SMIM10L1P0DMW3 83 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 NR2F6P10588 404 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 CHI3L1P36222 383 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ARL4DP49703 201 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 VSX2P58304 361 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 HBA1P69905 142 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 BNC1Q01954 994 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 FADDQ13158 208 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 NR0B2Q15466 257 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 HLA-BQ31612 363 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 RFX4Q33E94 735 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 TCTE1Q5JU00 501 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 FRMPD2BQ6IN97 320 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 TMEM214Q6NUQ4 689 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 MCATQ8IVS2 390 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC35F3Q8IY50 421 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ZNF786Q8N393 782 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ZCCHC10Q8TBK6 192 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ZFP90Q8TF47 636 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 NCLNQ969V3 563 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 TMBIM1Q969X1 311 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 CIDECQ96AQ7 238 aaPredicted RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms