RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 SKP1P63208 163 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 TRAP1Q12931 704 aaKnown RBP25.29■■□□□ 1.64
MSX1-201ENST00000382723 RIPK1Q13546 671 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 OR52E8Q6IFG1 317 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 ANGPTL8Q6UXH0 198 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 TTLL10Q6ZVT0 673 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 OR4N5Q8IXE1 308 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 CCDC116Q8IYX3 515 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 ZFP90Q8TF47 636 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 ZNF501Q96CX3 271 aaPredicted RBP25.29■■□□□ 1.64
MSX1-201ENST00000382723 FAM120BQ96EK7 910 aaKnown RBP25.29■■□□□ 1.64
MSX1-201ENST00000382723 AMDHD1Q96NU7 426 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 TRIM4Q9C037 500 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 ACSS1Q9NUB1 689 aaPredicted RBP25.29■■□□□ 1.64
MSX1-201ENST00000382723 GIMAP4Q9NUV9 329 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 SPEGQ15772 3267 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 NSA2O95478 260 aaKnown RBP25.29■■□□□ 1.64
MSX1-201ENST00000382723 ALAS2P22557 587 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 AVPR1BP47901 424 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 MAT1AQ00266 395 aaKnown RBP25.29■■□□□ 1.64
MSX1-201ENST00000382723 DUSP2Q05923 314 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 BNIP2Q12982 314 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 DHFR2Q86XF0 187 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 TMEM52Q8NDY8 209 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 OR2T12Q8NG77 320 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 SLC26A7Q8TE54 656 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 TMEM121BQ9BXQ6 578 aaPredicted RBP25.29■■□□□ 1.64
MSX1-201ENST00000382723 RBCK1Q9BYM8 510 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 TMEM9BQ9NQ34 198 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 FAM86C1Q9NVL1 165 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 NDOR1Q9UHB4 597 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 D6RAR5 112 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 H0Y3Z8 333 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 CYR61O00622 381 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 NTN3O00634 580 aaPredicted RBP25.28■■□□□ 1.64
MSX1-201ENST00000382723 KRT36O76013 467 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 STAMBPO95630 424 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 MSL3P1P0C860 447 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 NCK1P16333 377 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 ACP1P24666 158 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 CHI3L1P36222 383 aaPredicted RBP25.28■■□□□ 1.64
MSX1-201ENST00000382723 CDK9P50750 372 aaKnown RBP25.28■■□□□ 1.64
MSX1-201ENST00000382723 RAB38P57729 211 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 FAM214AQ32MH5 1076 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 AP3M1Q9Y2T2 418 aa25.28■■□□□ 1.64
MSX1-201ENST00000382723 MYO1GB0I1T2 1018 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 CSNK2A2P19784 350 aaPredicted RBP25.27■■□□□ 1.64
MSX1-201ENST00000382723 GPC1P35052 558 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 CASP9P55211 416 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 SYT16Q17RD7 645 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 NAXDQ8IW45 347 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 RNF31Q96EP0 1072 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 NEUROD4Q9HD90 331 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 NCDNQ9UBB6 729 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 DHCR7Q9UBM7 475 aaKnown RBP25.27■■□□□ 1.64
MSX1-201ENST00000382723 MAU2Q9Y6X3 613 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 CACNA1HO95180 2353 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 HTR1EP28566 365 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 EMP3P54852 163 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 ID2Q02363 134 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 SPDYE7PQ495Y7 208 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 DDX59Q5T1V6 619 aaKnown RBP eCLIP25.27■■□□□ 1.64
MSX1-201ENST00000382723 NIPAL1Q6NVV3 410 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 SPATA24Q86W54 205 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 OR4K14Q8NGD5 310 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 ZFP28Q8NHY6 868 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 SUN3Q8TAQ9 357 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 NDC1Q9BTX1 674 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 SIRT3Q9NTG7 399 aaPredicted RBP25.27■■□□□ 1.64
MSX1-201ENST00000382723 BCAP29Q9UHQ4 241 aa25.27■■□□□ 1.64
MSX1-201ENST00000382723 TMEM184BQ9Y519 407 aaPredicted RBP25.27■■□□□ 1.64
MSX1-201ENST00000382723 ARPC2O15144 300 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 ZNF749O43361 778 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 LDB3O75112 727 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 PSMG1O95456 288 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 UQCRC2P22695 453 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 PPIBP23284 216 aaKnown RBP25.26■■□□□ 1.63
MSX1-201ENST00000382723 MLC1Q15049 377 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 CLPPQ16740 277 aaPredicted RBP25.26■■□□□ 1.63
MSX1-201ENST00000382723 CYP51A1Q16850 503 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 CCDC157Q569K6 752 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 TLDC1Q6P9B6 456 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 SLITRK4Q8IW52 837 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 JADE3Q92613 823 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 PEX11GQ96HA9 241 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 LRGUKQ96M69 825 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 ZNF681Q96N22 645 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 OR6C1Q96RD1 312 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 PCDHB3Q9Y5E6 796 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 SNX13Q9Y5W8 968 aa25.26■■□□□ 1.63
MSX1-201ENST00000382723 RNF103-CHMP3A0A140T963 221 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 MYOCOSA0A1B0GUC4 107 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 GP1BAP07359 652 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 GPX2P18283 190 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 ATP6V1B2P21281 511 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 MPIP34949 423 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 GZMMP51124 257 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 XKP51811 444 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 ACY1Q03154 408 aa25.25■■□□□ 1.63
MSX1-201ENST00000382723 B3GNT8Q7Z7M8 397 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms