RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CNTN6Q9UQ52 1028 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 C17orf112F2Z3M2 114 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 RPP40O75818 363 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 RPP14O95059 124 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 AMY2AP04746 511 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 TXNP10599 105 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 CXCR1P25024 350 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 MTPNP58546 118 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 MEP1BQ16820 701 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 BRICD5Q6PL45 260 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 PARGQ86W56 976 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 LDHDQ86WU2 507 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 TXNDC5Q8NBS9 432 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 C16orf78Q8WTQ4 265 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 STYXQ8WUJ0 223 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 EXOSC8Q96B26 276 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 ZNF681Q96N22 645 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 KATNB1Q9BVA0 655 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 MAGIXQ9H6Y5 334 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 EBF1Q9UH73 591 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CACNB4O00305 520 aaPredicted RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 AMD1P17707 334 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 FGF7P21781 194 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 AHCYP23526 432 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 OPRL1P41146 370 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.42□□□□□ -1.06
LIG3-202ENST00000378526 KCTD18Q6PI47 426 aaPredicted RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 OR56A3Q8NH54 315 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 FAM46BQ96A09 425 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 PARK7Q99497 189 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 PRDM12Q9H4Q4 367 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 AMBNQ9NP70 447 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 ADAM29Q9UKF5 820 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 hCG_1818297A0A087WSY0 165 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 hCG_1807616A0A1W2PRN6 198 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 A6NHS1 94 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 EIF3FO00303 357 aaPredicted RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 GPR182O15218 404 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CD48P09326 243 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 UBE2G2P60604 165 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 HBG1P69891 147 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 HBG2P69892 147 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 ZNF543Q08ER8 600 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 GANABQ14697 944 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 ATPAF1Q5TC12 328 aaPredicted RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 BLOC1S3Q6QNY0 202 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 APOBEC3FQ8IUX4 373 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 OR13C9Q8NGT0 318 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 BBS10Q8TAM1 723 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 OR12D3Q9UGF7 316 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 KPTNQ9Y664 436 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CASP3P42574 277 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 AMHR2Q16671 573 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 FNDC3BQ53EP0 1204 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 CDCA2Q69YH5 1023 aaPredicted RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 ZNF582Q96NG8 517 aaPredicted RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 FBRSQ9HAH7 460 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 DNAJC5BQ9UF47 199 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CDK14O94921 469 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CD63P08962 238 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 HOXC6P09630 235 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 AVPR1BP47901 424 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 P2RX1P51575 399 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 RIDAP52758 137 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 HCCSP53701 268 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 ELAVL2Q12926 359 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 EMC10Q5UCC4 262 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 TMEM130Q8N3G9 435 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 WNT8BQ93098 351 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 FCRL2Q96LA5 508 aaPredicted RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 MACROD1Q9BQ69 325 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 MED18Q9BUE0 208 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 IL20Q9NYY1 176 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 PRDM15P57071 1507 aaPredicted RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 ABCA9Q8IUA7 1624 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 OR5H15A6NDH6 313 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 OR5H14A6NHG9 310 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 OR5H1A6NKK0 313 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 M0R143 59 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 DDCP20711 480 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 KITLGP21583 273 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 EIF4HQ15056 248 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 EXOSC6Q5RKV6 272 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 AWAT2Q6E213 333 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 DHRS11Q6UWP2 260 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 TREML1Q86YW5 311 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 SIRT2Q8IXJ6 389 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CLRN3Q8NCR9 226 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 MRPS30Q9NP92 439 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 ZFR2Q9UPR6 939 aaKnown RBP8.42□□□□□ -1.06
LIG3-202ENST00000378526 A8MVM7 634 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 PMM2O15305 246 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 ZBTB7AO95365 584 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CELP19835 753 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CCKARP32238 428 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 ENPP2Q13822 863 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 CHST9Q7L1S5 443 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 LIX1LQ8IVB5 337 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 BANPQ8N9N5 519 aa8.42□□□□□ -1.06
LIG3-202ENST00000378526 ABHD11Q8NFV4 315 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms