RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 TDGQ13569 410 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 LINC00471Q8N535 108 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 GMPR2Q9P2T1 348 aaKnown RBP13.82□□□□□ -0.2
TCOF1-202ENST00000377797 RNASET2O00584 256 aaKnown RBP13.82□□□□□ -0.2
TCOF1-202ENST00000377797 PORP16435 677 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-202ENST00000377797 GABRA3P34903 492 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 CLCN2P51788 898 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 SYT16Q17RD7 645 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 RASGRP3Q8IV61 690 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 MARVELD2Q8N4S9 558 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 OR56A3Q8NH54 315 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 HLA-CQ95604 372 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 FAM129BQ96TA1 746 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 HDHD2Q9H0R4 259 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 MAGIXQ9H6Y5 334 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 MYNNQ9NPC7 610 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 HCN3Q9P1Z3 774 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 NEU3Q9UQ49 428 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 RPL36Q9Y3U8 105 aaKnown RBP13.82□□□□□ -0.2
TCOF1-202ENST00000377797 CASP8AP2Q9UKL3 1982 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 KIR2DS5A0A0G2JLQ3 304 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 A0A0G2JNG1 304 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 KIR2DS3K7RE56 304 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 OR2B3O76000 313 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 CD6P30203 668 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 KIR2DS5Q14953 304 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 COLEC12Q5KU26 742 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 USP30Q70CQ3 517 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 FAM210AQ96ND0 272 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 PLGRKTQ9HBL7 147 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 CPNE7Q9UBL6 633 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 XKRYO14609 159 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 TNFRSF1BP20333 461 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 EPHA5P54756 1037 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 POU6F2P78424 691 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-202ENST00000377797 PERM1Q5SV97 790 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 OR52E4Q8NGH9 312 aa13.82□□□□□ -0.2
TCOF1-202ENST00000377797 ELOA3DA6NLF2 546 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-202ENST00000377797 H0YAE9 185 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 DUX1O43812 170 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 PVRP15151 417 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 PTNP21246 168 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 CSTF2P33240 577 aaKnown RBP eCLIP13.81□□□□□ -0.2
TCOF1-202ENST00000377797 NNATQ16517 81 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 DECR1Q16698 335 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 CNPY1Q3B7I2 92 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ELOA3BQ3SY89 546 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 JAZF1Q86VZ6 243 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ELOA3Q8NG57 546 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ADAMTS19Q8TE59 1207 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ZNF707Q96C28 371 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-202ENST00000377797 TEX37Q96LM6 180 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 HSPA12BQ96MM6 686 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 KAT8Q9H7Z6 458 aaKnown RBP13.81□□□□□ -0.2
TCOF1-202ENST00000377797 SUSD2Q9UGT4 822 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 H3BSA7 217 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 CH25HO95992 272 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 SELPLGQ14242 412 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 NIPAL1Q6NVV3 410 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ARHGAP22Q7Z5H3 698 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 TECPR1Q7Z6L1 1165 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 CROCCP3Q8IVE0 287 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ZNF527Q8NB42 609 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 RAB2BQ8WUD1 216 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 PIP5K1AQ99755 562 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 TET1Q8NFU7 2136 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 TCRBV3S1A0A5B6 114 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 FAM221BA6H8Z2 402 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 GFYI3L273 518 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 TSPAN12O95859 305 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 HMGN1P05114 100 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 C7P10643 843 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 NPPBP16860 134 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 SLC29A4Q7RTT9 530 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 LAPTM4BQ86VI4 370 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 PSMA8Q8TAA3 256 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ABCB10Q9NRK6 738 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 PTTG2Q9NZH5 202 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 AGXTP21549 392 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ATP5A1P25705 553 aaKnown RBP13.81□□□□□ -0.2
TCOF1-202ENST00000377797 ACSL1P33121 698 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 CXCL12P48061 93 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 NRG3P56975 720 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 YPEL5P62699 121 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 TRAM2Q15035 370 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 TAF13Q15543 124 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 SHQ1Q6PI26 577 aaKnown RBP13.81□□□□□ -0.2
TCOF1-202ENST00000377797 GALNT12Q8IXK2 581 aa13.81□□□□□ -0.2
TCOF1-202ENST00000377797 PITHD1Q9GZP4 211 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-202ENST00000377797 YBX2Q9Y2T7 364 aaKnown RBP13.81□□□□□ -0.2
TCOF1-202ENST00000377797 TRIOBPQ9H2D6 2365 aa13.8□□□□□ -0.2
TCOF1-202ENST00000377797 LOC285556D6RIA3 1793 aa13.8□□□□□ -0.2
TCOF1-202ENST00000377797 H0YJX3 145 aa13.8□□□□□ -0.2
TCOF1-202ENST00000377797 HCN1O60741 890 aa13.8□□□□□ -0.2
TCOF1-202ENST00000377797 CD160O95971 181 aa13.8□□□□□ -0.2
TCOF1-202ENST00000377797 LINGO3P0C6S8 592 aa13.8□□□□□ -0.2
TCOF1-202ENST00000377797 ELK4P28324 431 aa13.8□□□□□ -0.2
TCOF1-202ENST00000377797 IL18R1Q13478 541 aa13.8□□□□□ -0.2
TCOF1-202ENST00000377797 EIF4EBP2Q13542 120 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-202ENST00000377797 EXOC3L2Q2M3D2 409 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms