RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 OR52E1Q8NGJ3 308 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 LRRC15Q8TF66 581 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PRCCQ92733 491 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 EEF2KMTQ96G04 330 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 CXorf58Q96LI9 332 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 LURAP1Q96LR2 239 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ERGIC2Q96RQ1 377 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 RUFY1Q96T51 708 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 NAP1L3Q99457 506 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 FAM213AQ9BRX8 229 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 TEX13AQ9BXU3 409 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 HOXD1Q9GZZ0 328 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ABCG4Q9H172 646 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ABCG8Q9H221 673 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 DPEP3Q9H4B8 488 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 KCNMB3Q9NPA1 279 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 NDE1Q9NXR1 346 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF319Q9P2F9 582 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 UBQLN2Q9UHD9 624 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ERVK-19Q9WJR5 959 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 RPH3AQ9Y2J0 694 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SPAG9O60271 1321 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ATP6AP2A0A1C7CYW4 349 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 MACROD2A1Z1Q3 448 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CCDC69A6NI79 296 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 NKX6-3A6NJ46 265 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SLC9B1P1A6NJY1 282 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 TCP10L2B9ZVM9 353 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SLC28A1O00337 649 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 OGTO15294 1046 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 TLX2O43763 284 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 PRDM1O75626 825 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SLC4A1P02730 911 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 GSTA2P09210 222 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 GP9P14770 177 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 ANPEPP15144 967 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 AREGP15514 252 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CYP3A5P20815 502 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 AHCYP23526 432 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 PITPNBP48739 271 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CNN1P51911 297 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 HNRNPFP52597 415 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 BACE1P56817 501 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 DHODHQ02127 395 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 GABPAQ06546 454 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 WASHC5Q12768 1159 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 PRAMEF7Q5VXH5 474 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CD164L2Q6UWJ8 174 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 ADAMTSL2Q86TH1 951 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 NLRP14Q86W24 1093 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SLC34A3Q8N130 599 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CCDC197Q8NCU1 140 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CCNYQ8ND76 341 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 TMEM185AQ8NFB2 350 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 OR4L1Q8NH43 312 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 EXOC6Q8TAG9 804 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 GANCQ8TET4 914 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SLC13A3Q8WWT9 602 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 RUNDC3BQ96NL0 473 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SSX3Q99909 188 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CCM2Q9BSQ5 444 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SPXQ9BT56 116 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CARD9Q9H257 536 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 TNMDQ9H2S6 317 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 FNDC4Q9H6D8 234 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 DCLRE1BQ9H816 532 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 MARCH7Q9H992 704 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 VIPAS39Q9H9C1 493 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SYTL2Q9HCH5 934 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 ABCB10Q9NRK6 738 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 DDX28Q9NUL7 540 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 BAIAP2L1Q9UHR4 511 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 LNPEPQ9UIQ6 1025 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 ODF2LQ9ULJ1 636 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 RNF123Q5XPI4 1314 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 KRT87PA6NCN2 255 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 A8MU76 341 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CEACAM4O75871 244 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 POP4O95707 220 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 LYNP07948 512 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 HOXD4P09016 255 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 GAP43P17677 238 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 GPX3P22352 226 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 STIP1P31948 543 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SRP54P61011 504 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 HERV-K104P63124 156 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 IRX4P78413 519 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 IL1RL1Q01638 556 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 PPP1R8Q12972 351 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 MSLNQ13421 630 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 MTHFSDQ2M296 383 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CAPN13Q6MZZ7 669 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CNSTQ6PJW8 725 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 C1orf186Q6ZWK4 172 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CYP4V2Q6ZWL3 525 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 ZER1Q7Z7L7 766 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 SLC25A42Q86VD7 318 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CACUL1Q86Y37 369 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 OR5M9Q8NGP3 310 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 TYMSOSQ8TAI1 123 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms