RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ACDQ96AP0 544 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 SLC17A9Q9BYT1 436 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 PRDM9Q9NQV7 894 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 PCDHB10Q9UN67 800 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 HTR3EA5X5Y0 456 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 DPPA5A6NC42 116 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 S100A9P06702 114 aaKnown RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 TFPTP0C1Z6 253 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 FAUP35544 74 aaKnown RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 RAB2AP61019 212 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GPR17Q13304 367 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GTF2IRD2BQ6EKJ0 949 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GTF2IRD2Q86UP8 949 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 SIX4Q9UIU6 781 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ZNF670-ZNF695F2Z2N8 137 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 AGPSO00116 658 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 TGFBR2P37173 567 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 PRMT2P55345 433 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ADRM1Q16186 407 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CST9Q5W186 159 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 LEG1Q6P5S2 330 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 FGF13Q92913 245 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 FAM46AQ96IP4 442 aaKnown RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 HCFC2Q9Y5Z7 792 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 HTR3BO95264 441 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 RLN2P04090 185 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GADD45AP24522 165 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 XIAPP98170 497 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ABRAXAS2Q15018 415 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ANKRD34AQ69YU3 496 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 FRMD7Q6ZUT3 714 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 WDTC1Q8N5D0 677 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 OR52B6Q8NGF0 335 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 OR13C3Q8NGS6 347 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CD300LFQ8TDQ1 290 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 PRR14Q9BWN1 585 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GPN1Q9HCN4 374 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 PPP1R14DQ9NXH3 145 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ZNF221Q9UK13 617 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 RARRES3Q9UL19 164 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 PDE10AQ9Y233 779 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 SERTM1A2A2V5 107 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 DUX1O43812 170 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ACTL6BO94805 426 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 TIMP2P16035 220 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GPX6P59796 221 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 SLC25A25Q6KCM7 469 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 C12orf40Q86WS4 652 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 NXPE2Q96DL1 559 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CPNE2Q96FN4 548 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 POMPQ9Y244 141 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CFL2Q9Y281 166 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CEP152O94986 1710 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 FAM183AA6NL82 134 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CHP2O43745 196 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 DFNA5O60443 496 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 KNG1P01042 644 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 F11P03951 625 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CD9P21926 228 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CDKN2DP55273 166 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ROR2Q01974 943 aaKnown RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 COL19A1Q14993 1142 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ZNF789Q5FWF6 425 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 SHQ1Q6PI26 577 aaKnown RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 ASPGQ86U10 573 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 IQCF1Q8N6M8 205 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CSNK1A1LQ8N752 337 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CLEC1AQ8NC01 280 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CNIH3Q8TBE1 160 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 HLA-CQ95604 372 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GAREM1Q9H706 876 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 B3GAT2Q9NPZ5 323 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 KLHL13Q9P2N7 655 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CD2P06729 351 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 MAP2K4P45985 399 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 XCR1P46094 333 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 IST1P53990 364 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 RPL11P62913 178 aaKnown RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 KLBQ86Z14 1044 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GPR137CQ8N3F9 429 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 PEX13Q92968 403 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 PGM2Q96G03 612 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 CADM1Q9BY67 442 aaKnown RBP7.04□□□□□ -1.28
VPS13A-202ENST00000357409 SFXN1Q9H9B4 322 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 GPRC5BQ9NZH0 403 aa7.04□□□□□ -1.28
VPS13A-202ENST00000357409 NRG2O14511 850 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ZIC2O95409 532 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PPP1R3DO95685 299 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 H1F0P07305 194 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 CELP19835 753 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PTPN6P29350 595 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ACADVLP49748 655 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 SEC61A1P61619 476 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TBPL1P62380 186 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ST3GAL3Q11203 375 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 EXOSC7Q15024 291 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ANKDD1AQ495B1 522 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 CDKL4Q5MAI5 379 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 THOC7Q6I9Y2 204 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms