RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TEX15Q9BXT5 2789 aa17.08■□□□□ 0.33
CLN3-202ENST00000355477 ZNF407Q9C0G0 2248 aa17.08■□□□□ 0.33
CLN3-202ENST00000355477 IQANK1A0A1B0GTG1 560 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 GLOD5A6NK44 160 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 DLX3O60479 287 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 OR2J2O76002 312 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 CLDN1O95832 211 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 FAM58BPP0C7Q3 252 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 PYGBP11216 843 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 HSD17B3P37058 310 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 STT3AP46977 705 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 GGTA1PQ4G0N0 100 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 UNC50Q53HI1 259 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 SGO1Q5FBB7 561 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 RNFT1Q5M7Z0 435 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 C1QL3Q5VWW1 255 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 TTC19Q6DKK2 380 aaPredicted RBP17.08■□□□□ 0.32
CLN3-202ENST00000355477 LETMD1Q6P1Q0 360 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 CYP20A1Q6UW02 462 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 HSDL2Q6YN16 418 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 MDGA2Q7Z553 956 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 TMEM156Q8N614 296 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 CPSF7Q8N684 471 aaKnown RBP17.08■□□□□ 0.32
CLN3-202ENST00000355477 ZNF721Q8TF20 911 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 TANKQ92844 425 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 SERPINI1Q99574 410 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 FARSBQ9NSD9 589 aaKnown RBP17.08■□□□□ 0.32
CLN3-202ENST00000355477 LYARQ9NX58 379 aaKnown RBP17.08■□□□□ 0.32
CLN3-202ENST00000355477 PSMC3IPQ9P2W1 217 aaPredicted RBP17.08■□□□□ 0.32
CLN3-202ENST00000355477 MYOTQ9UBF9 498 aa17.08■□□□□ 0.32
CLN3-202ENST00000355477 YARS2Q9Y2Z4 477 aaKnown RBP17.08■□□□□ 0.32
CLN3-202ENST00000355477 DNAJC13O75165 2243 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 CACNA1DQ01668 2161 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 A0A1W2PPM1 405 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 HRKO00198 91 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 WWP2O00308 870 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 OTCP00480 354 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 SHBGP04278 402 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 TLX1P31314 330 aaPredicted RBP17.07■□□□□ 0.32
CLN3-202ENST00000355477 SSR4P51571 173 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 HK2P52789 917 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 HERVK_113P63132 956 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 RNF4P78317 190 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 ALDH6A1Q02252 535 aaKnown RBP17.07■□□□□ 0.32
CLN3-202ENST00000355477 IFT88Q13099 833 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 FJX1Q86VR8 437 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 SIAH3Q8IW03 269 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 CYP4Z2PQ8N1L4 340 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 EIF1ADQ8N9N8 165 aaKnown RBP17.07■□□□□ 0.32
CLN3-202ENST00000355477 TRPC4APQ8TEL6 797 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 DOK4Q8TEW6 326 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 SENP5Q96HI0 755 aaPredicted RBP17.07■□□□□ 0.32
CLN3-202ENST00000355477 DGAT2Q96PD7 388 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 ERVK-6Q9BXR3 956 aa17.07■□□□□ 0.32
CLN3-202ENST00000355477 MRPL1Q9BYD6 325 aaKnown RBP17.07■□□□□ 0.32
CLN3-202ENST00000355477 NPIPA5E9PKD4 350 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 PGRMC2O15173 223 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 ZNF354AO60765 605 aaPredicted RBP17.06■□□□□ 0.32
CLN3-202ENST00000355477 SEMA3DO95025 777 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 GPR75O95800 540 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 AIFM1O95831 613 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 PDYNP01213 254 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 TAC1P20366 129 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 BUD31P41223 144 aaPredicted RBP17.06■□□□□ 0.32
CLN3-202ENST00000355477 CLCQ05315 142 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 ZNF678Q5SXM1 525 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 LCA5Q86VQ0 697 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 NUDT13Q86X67 352 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 SULF2Q8IWU5 870 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 ACMSDQ8TDX5 336 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 RELTQ969Z4 430 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 TMEM125Q96AQ2 219 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 RBM18Q96H35 190 aaKnown RBP17.06■□□□□ 0.32
CLN3-202ENST00000355477 GPR137Q96N19 417 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 TMEM237Q96Q45 408 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 RASL10BQ96S79 203 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 ELOVL6Q9H5J4 265 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 TEX10Q9NXF1 929 aaPredicted RBP17.06■□□□□ 0.32
CLN3-202ENST00000355477 NPIPA1Q9UND3 350 aa17.06■□□□□ 0.32
CLN3-202ENST00000355477 NOTCH2Q04721 2471 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 NINQ8N4C6 2090 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 A0A1B0GUH1 482 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 A0A1W2PS29 197 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 ZNHIT1O43257 154 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 SUPT7LO94864 414 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 OR6B1O95007 311 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 OR4F21O95013 312 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 IGKV3-11P04433 115 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 KLK1P06870 262 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 NR2F6P10588 404 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 COX7A2P14406 83 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 IMPDH1P20839 514 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 SOX3P41225 446 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 MEOX1P50221 254 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 BIKQ13323 160 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 C10orf62Q5T681 223 aaPredicted RBP17.05■□□□□ 0.32
CLN3-202ENST00000355477 IL20RBQ6UXL0 311 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 SH2D5Q6ZV89 423 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 FAM98AQ8NCA5 519 aaKnown RBP17.05■□□□□ 0.32
CLN3-202ENST00000355477 MYRIPQ8NFW9 859 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms