RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 NSG1P42857 185 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NUDT2P50583 147 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HLCSP50747 726 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CLCNKAP51800 687 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SLC7A2P52569 658 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LBX1P52954 281 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PNLIPRP1P54315 467 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 EEFSECP57772 596 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 RPS14P62263 151 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 MRPS22P82650 360 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 FPGSQ05932 587 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF33BQ06732 778 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF177Q13360 481 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 KCNAB1Q14722 419 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 WSCD2Q2TBF2 565 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CNPY1Q3B7I2 92 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 TMEM196Q5HYL7 178 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 C6orf52Q5T4I8 152 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LCE4AQ5TA78 99 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SULT1C3Q6IMI6 304 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ANKRD54Q6NXT1 300 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CASC4Q6P4E1 433 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 BRAT1Q6PJG6 821 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 IZUMO2Q6UXV1 221 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 MSANTD1Q6ZTZ1 278 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 MED25Q71SY5 747 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LRRC70Q7Z2Q7 622 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SERPINA11Q86U17 422 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 MFN1Q8IWA4 741 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 AQP12AQ8IXF9 295 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ARHGAP24Q8N264 748 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 RNF148Q8N7C7 305 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PAF1Q8N7H5 531 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF740Q8NDX6 193 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 TMA16Q96EY4 203 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 BMFQ96LC9 184 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF285Q96NJ3 590 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ASB2Q96Q27 587 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 TEFMQ96QE5 360 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 HBEGFQ99075 208 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 GPA33Q99795 319 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SPATA16Q9BXB7 569 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SLC29A3Q9BZD2 475 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 BTBD1Q9H0C5 482 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SPAG4Q9NPE6 437 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SPATS2LQ9NUQ6 558 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.19□□□□□ -2.064e-6■■□□□ 12.5
VPS54-202ENST00000354504 TAS2R13Q9NYV9 303 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CCDC167Q9P0B6 97 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 TMCO1Q9UM00 188 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LIPT1Q9Y234 373 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PLEKHM1Q9Y4G2 1056 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 U3KQA8 63 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 A0A096LPI6 279 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 TRAV19A0A0A6YYK7 116 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 A0A1W2PPC4 97 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CDHR4A6H8M9 788 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 TRPC5OSA6NMA1 111 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NEDD8-MDP1E9PL57 170 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 H0Y3Z8 333 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PDLIM1O00151 329 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 UBDO15205 165 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NVLO15381 856 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 TNFSF14O43557 240 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SEC14L2O76054 403 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 POP4O95707 220 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 SLC16A8O95907 504 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 FESP07332 822 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 RETP07949 1114 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CKMT1AP12532 417 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HGFP14210 728 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 IDO1P14902 403 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NCK1P16333 377 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PSMC3P17980 439 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CDH2P19022 906 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 S1PR1P21453 382 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PAX7P23759 505 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 DCKP27707 260 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 GRK5P34947 590 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 POLR2JP52435 117 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 LIM2P55344 173 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SOX8P57073 446 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NAA20P61599 178 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PPP2CBP62714 309 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PPP2CAP67775 309 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 VLDLRP98155 873 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HMGCS1Q01581 520 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 GRSF1Q12849 480 aaKnown RBP eCLIP2.19□□□□□ -2.06
VPS54-202ENST00000354504 PON2Q15165 354 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CTF1Q16619 201 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZIK1Q3SY52 487 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 KHDC1LQ5JSQ8 128 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SPANXN4Q5MJ08 99 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LGSNQ5TDP6 509 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 MLIPQ5VWP3 458 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SAXO2Q658L1 398 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 MRNIPQ6NTE8 343 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SCIMPQ6UWF3 145 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 GCNT7Q6ZNI0 430 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SATL1Q86VE3 508 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms