RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ACPPP15309 386 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 ALOX15P16050 662 aaPredicted RBP20.77■□□□□ 0.92
SHMT1-203ENST00000354098 LBPP18428 481 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 DIO3P55073 304 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 ERVK-8P63133 956 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 STX4Q12846 297 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 DEFB109BQ30KR1 87 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 OR52E8Q6IFG1 317 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 FAM180BQ6P0A1 224 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 SLC48A1Q6P1K1 146 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 C19orf48Q6RUI8 117 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 CPEB2Q7Z5Q1 589 aaKnown RBP20.77■□□□□ 0.92
SHMT1-203ENST00000354098 LRRC34Q8IZ02 419 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 EBF4Q9BQW3 602 aa20.77■□□□□ 0.92
SHMT1-203ENST00000354098 POLR3GO15318 223 aaPredicted RBP20.77■□□□□ 0.91
SHMT1-203ENST00000354098 LRATO95237 230 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 TGDSO95455 350 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 COX6A1P12074 109 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 MAPK1P28482 360 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 IDH3AP50213 366 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 PTGR1Q14914 329 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 HEPACAMQ14CZ8 416 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 SMU1Q2TAY7 513 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 ZNF750Q32MQ0 723 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 SFT2D3Q587I9 215 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 NXNQ6DKJ4 435 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 RFWD2Q8NHY2 731 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 THAP4Q8WY91 577 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 NPHS2Q9NP85 383 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 FBXL4Q9UKA2 621 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 POLHQ9Y253 713 aa20.77■□□□□ 0.91
SHMT1-203ENST00000354098 EIF3LQ9Y262 564 aaKnown RBP20.77■□□□□ 0.91
SHMT1-203ENST00000354098 IGHV1-45A0A0A0MS14 117 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 A8MUA0 341 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 PEX12O00623 359 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 GPR75O95800 540 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 G6PDP11413 515 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 DRD2P14416 443 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 GSTM5P46439 218 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 OR4D2P58180 307 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 IGLV3-21P80748 117 aaPredicted RBP20.76■□□□□ 0.91
SHMT1-203ENST00000354098 PCOLCEQ15113 449 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 PRSS53Q2L4Q9 553 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 SNRNP27Q8WVK2 155 aaKnown RBP20.76■□□□□ 0.91
SHMT1-203ENST00000354098 IP6K3Q96PC2 410 aa20.76■□□□□ 0.91
SHMT1-203ENST00000354098 ZNF317Q96PQ6 595 aaPredicted RBP20.76■□□□□ 0.91
SHMT1-203ENST00000354098 WDR77Q9BQA1 342 aaPredicted RBP20.76■□□□□ 0.91
SHMT1-203ENST00000354098 PNO1Q9NRX1 252 aaKnown RBP20.76■□□□□ 0.91
SHMT1-203ENST00000354098 NOP53Q9NZM5 478 aaKnown RBP20.76■□□□□ 0.91
SHMT1-203ENST00000354098 C19orf25Q9UFG5 118 aaPredicted RBP20.76■□□□□ 0.91
SHMT1-203ENST00000354098 USP24Q9UPU5 2620 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 PTPRQQ9UMZ3 2332 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 AKAP10O43572 662 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 SEC24DO94855 1032 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-203ENST00000354098 ALDOCP09972 364 aaKnown RBP20.75■□□□□ 0.91
SHMT1-203ENST00000354098 DDCP20711 480 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 MAD2L1Q13257 205 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-203ENST00000354098 LSM12Q3MHD2 195 aaKnown RBP20.75■□□□□ 0.91
SHMT1-203ENST00000354098 OGFOD2Q6N063 350 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 CGB2Q6NT52 195 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 OR4K14Q8NGD5 310 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 ACTRT2Q8TDY3 377 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 NUDT8Q8WV74 236 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 ZNF700Q9H0M5 742 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 ASIC5Q9NY37 505 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 DCTN4Q9UJW0 460 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 MAN2B2Q9Y2E5 1009 aa20.75■□□□□ 0.91
SHMT1-203ENST00000354098 WBP11Q9Y2W2 641 aaKnown RBP20.75■□□□□ 0.91
SHMT1-203ENST00000354098 DSPP15924 2871 aaKnown RBP20.74■□□□□ 0.91
SHMT1-203ENST00000354098 A0A1W2PQ72 361 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 ARGFXA6NJG6 315 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 PCDH17O14917 1159 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 ERAL1O75616 437 aaKnown RBP20.74■□□□□ 0.91
SHMT1-203ENST00000354098 PRPS2P11908 318 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 SF3A3Q12874 501 aaKnown RBP eCLIP20.74■□□□□ 0.912e-6■■■■■ 29.6
SHMT1-203ENST00000354098 CHAF1BQ13112 559 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 TMEM198Q66K66 360 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 IKBIPQ70UQ0 350 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 NDUFAF7Q7L592 441 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 TICAM1Q8IUC6 712 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 EXOSC8Q96B26 276 aaKnown RBP20.74■□□□□ 0.91
SHMT1-203ENST00000354098 PPWD1Q96BP3 646 aaKnown RBP20.74■□□□□ 0.91
SHMT1-203ENST00000354098 KLHL29Q96CT2 875 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 KCNK13Q9HB14 408 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 ZNF160Q9HCG1 818 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 UTS2RQ9UKP6 389 aa20.74■□□□□ 0.91
SHMT1-203ENST00000354098 IFNA16P05015 189 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 PIK3R1P27986 724 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 XKP51811 444 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 ACTN3Q08043 901 aaPredicted RBP20.73■□□□□ 0.91
SHMT1-203ENST00000354098 COL28A1Q2UY09 1125 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 DCAF10Q5QP82 559 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 CPZQ66K79 652 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 ANKRD26P1Q6NSI1 321 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 DGAT2L6Q6ZPD8 337 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 CEP70Q8NHQ1 597 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 PRORYQ9H606 182 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 MIEF1Q9NQG6 463 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 NSG1A0A0A6YYJ2 146 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 FEN1P39748 380 aaKnown RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms