RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 IGKV6D-21A0A0A0MT36 114 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 ELOVL7A1L3X0 281 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 B8ZZF3 427 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 SMAD9O15198 467 aaKnown RBP8□□□□□ -1.13
HMGB1-203ENST00000341423 RNF13O43567 381 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 CD2P06729 351 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 LBPP18428 481 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 S100A7P31151 101 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 DOC2BQ14184 412 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 OR8B8Q15620 311 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 TDRPQ86YL5 185 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 PLD3Q8IV08 490 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 UEVLDQ8IX04 471 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 TIGD4Q8IY51 512 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 OR52E1Q8NGJ3 308 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 IPPKQ9H8X2 491 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 BRD7Q9NPI1 651 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 LRRC37A3O60309 1634 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 RIIAD1A6NNX1 92 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF587BE7ETH6 402 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 RFXANKO14593 260 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 CCT3P49368 545 aaKnown RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 NR1H2P55055 460 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 CARD18P57730 90 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 GMFBP60983 142 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 OGDHQ02218 1023 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 CTBP1Q13363 440 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 RPE65Q16518 533 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 KLHL12Q53G59 568 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ARMCX4Q5H9R4 360 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 TTC33Q6PID6 262 aaPredicted RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 UBTD2Q8WUN7 234 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 CERS2Q96G23 380 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 TSSK3Q96PN8 268 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PIMREGQ9BSJ6 248 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PLA2G3Q9NZ20 509 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 MAP4K5Q9Y4K4 846 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 AKAP11Q9UKA4 1901 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 TEX13CA0A0J9YWL9 993 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ANKRD30BLA7E2S9 258 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 AP1G1O43747 822 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 B4GALT3O60512 393 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ARFIP2P53365 341 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ARFIP1P53367 373 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PCBD1P61457 104 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PSPHP78330 225 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 RUNX1T1Q06455 604 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 KLF1Q13351 362 aaPredicted RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 MARCH8Q5T0T0 291 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 KIAA0408Q6ZU52 694 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 LRRTM3Q86VH5 581 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 FMR1NBQ8N0W7 255 aaPredicted RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF283Q8N7M2 679 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 OR6Y1Q8NGX8 325 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 SPATA22Q8NHS9 363 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 FAM84AQ96KN4 292 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 MBOAT7Q96N66 472 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PIGVQ9NUD9 493 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 VDAC3Q9Y277 283 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 IFT172Q9UG01 1749 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 NR5A2O00482 541 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 SERPINA7P05543 415 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PRDX3P30048 256 aaKnown RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 KIR3DL1P43629 444 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ATP12AP54707 1039 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 RBBP4Q09028 425 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 TYW3Q6IPR3 259 aaKnown RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 CD163Q86VB7 1156 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 THOC6Q86W42 341 aaKnown RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 SPATS2Q86XZ4 545 aaKnown RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 FAM71AQ8IYT1 594 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 OR4K1Q8NGD4 311 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 DNAJB8Q8NHS0 232 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 GIPC3Q8TF64 312 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 FBXL8Q96CD0 374 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 DCUN1D5Q9BTE7 237 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PITPNM3Q9BZ71 974 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PLA2G2FQ9BZM2 168 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 C5AR2Q9P296 337 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 B3GALT1Q9Y5Z6 326 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 C1orf226A1L170 272 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PCDH7O60245 1069 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 MFN2O95140 757 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 EPOP01588 193 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 CFL1P23528 166 aaKnown RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 HOXD9P28356 352 aaPredicted RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 AAED1Q7RTV5 226 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ARPINQ7Z6K5 226 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 TEX47Q8TBZ9 253 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 ABTB1Q969K4 478 aaPredicted RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 SERINC2Q96SA4 455 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 DCLRE1CQ96SD1 692 aaKnown RBP7.99□□□□□ -1.13
HMGB1-203ENST00000341423 AP4B1Q9Y6B7 739 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 PIK3C2AO00443 1686 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 CCDC154A6NI56 674 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 LILRA5A6NI73 299 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 C1QTNF9BB2RNN3 333 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 H0YAE9 185 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 UBDO15205 165 aa7.99□□□□□ -1.13
HMGB1-203ENST00000341423 UGT2B17O75795 530 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms