RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ALPK1Q96QP1 1244 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 DPH7Q9BTV6 452 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 SPATA9Q9BWV2 254 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 KLHL25Q9H0H3 589 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 EQTNQ9NQ60 294 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 SNRNP200O75643 2136 aaKnown RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 LOC100506127A0A0U1RQW1 187 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ERI3O43414 337 aaKnown RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 RPN2P04844 631 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 HOXB6P17509 224 aaKnown RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 CCT3P49368 545 aaKnown RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 PROX2Q3B8N5 592 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF829Q3KNS6 432 aaPredicted RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 UBE3DQ7Z6J8 389 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 NUDT13Q86X67 352 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 BORCS5Q969J3 196 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 TBC1D20Q96BZ9 403 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 CAMK1GQ96NX5 476 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 PIP5K1AQ99755 562 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 MENTQ9BUN1 341 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 QRSL1Q9H0R6 528 aaKnown RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 PHPT1Q9NRX4 125 aaPredicted RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 SPHK1Q9NYA1 384 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 SCN2AQ99250 2005 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 SH3PXD2BA1X283 911 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 H0Y8X5 98 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 CD72P21854 359 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 CXCR2P25025 360 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 AK4P27144 223 aaPredicted RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 CRISP3P54108 245 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 SHHQ15465 462 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 MOGQ16653 247 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 NDUFAF5Q5TEU4 345 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF793Q6ZN11 406 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 PAGE2Q7Z2X7 111 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF605Q86T29 641 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ADCK1Q86TW2 530 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ANKRD13BQ86YJ7 626 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 POP5Q969H6 163 aaKnown RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 RAB7BQ96AH8 199 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 PRR14Q9BWN1 585 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 AICDAQ9GZX7 198 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 RNF167Q9H6Y7 350 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 C4orf51C9J302 202 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 M0R3H8 397 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 CCNB2O95067 398 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 RECKO95980 971 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 JUNDP17535 347 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 PTNP21246 168 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 LIPAP38571 399 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 NCBP2P52298 156 aaKnown RBP eCLIP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 LSM11P83369 360 aaKnown RBP eCLIP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 RPA4Q13156 261 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 GPR19Q15760 415 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 LACC1Q8IV20 430 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 CCDC116Q8IYX3 515 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 CLIP4Q8N3C7 705 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 STX19Q8N4C7 294 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 FBXL6Q8N531 539 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 OR4E2Q8NGC2 313 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 OR52E1Q8NGJ3 308 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF566Q969W8 418 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 RGMAQ96B86 450 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF347Q96SE7 839 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 TMEM38AQ9H6F2 299 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 NMNAT1Q9HAN9 279 aaPredicted RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 ZCCHC3Q9NUD5 404 aaKnown RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 SCHIP1Q9P0W5 487 aaPredicted RBP9.82□□□□□ -0.84
LIMA1-201ENST00000341247 SPATA7Q9P0W8 599 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 NAALAD2Q9Y3Q0 740 aa9.82□□□□□ -0.84
LIMA1-201ENST00000341247 SDK1Q7Z5N4 2213 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 ISM1B1AKI9 464 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 FFAR1O14842 300 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 PGRMC2O15173 223 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 OR10H3O60404 316 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 IFNA14P01570 189 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 IDUAP35475 653 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 GGT2P36268 569 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 BCL6P41182 706 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 CLK1P49759 484 aaKnown RBP9.81□□□□□ -0.84
LIMA1-201ENST00000341247 RBBP4Q09028 425 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 PIN1Q13526 163 aaPredicted RBP9.81□□□□□ -0.84
LIMA1-201ENST00000341247 BCDIN3DQ7Z5W3 292 aaKnown RBP9.81□□□□□ -0.84
LIMA1-201ENST00000341247 GPR32P1Q8NGA4 272 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 OR4C15Q8NGM1 316 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 OR2A1Q8NGT9 310 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 GGHQ92820 318 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 CNDP2Q96KP4 475 aaKnown RBP9.81□□□□□ -0.84
LIMA1-201ENST00000341247 BBS4Q96RK4 519 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 SERHL2Q9H4I8 314 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 SYNPO2LQ9H987 977 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 MRPS30Q9NP92 439 aaKnown RBP9.81□□□□□ -0.84
LIMA1-201ENST00000341247 MS4A12Q9NXJ0 267 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF226Q9NYT6 803 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 GDE1Q9NZC3 331 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 SEC14L3Q9UDX4 400 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 PCDHGA2Q9Y5H1 932 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 ENPP4Q9Y6X5 453 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 H3BN98 237 aa9.81□□□□□ -0.84
LIMA1-201ENST00000341247 HMGN4O00479 90 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms