RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CCDC106Q9BWC9 280 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 LRIT1Q9P2V4 623 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 RPL36Q9Y3U8 105 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 LYVE1Q9Y5Y7 322 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SLC22A7Q9Y694 548 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CASP8AP2Q9UKL3 1982 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 E7EQ34 232 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 RPL13AP3Q6NVV1 102 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 CADM2Q8N3J6 435 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 OR10G2Q8NGC3 310 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 BIRC7Q96CA5 298 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TCTN2Q96GX1 697 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 CCDC115Q96NT0 180 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SLC39A3Q9BRY0 314 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 CSNK1G3Q9Y6M4 447 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ENPP4Q9Y6X5 453 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 POM121BA6NF01 834 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ELOA3DA6NLF2 546 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 EI24O14681 340 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 B3GALNT1O75752 331 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PGM3O95394 542 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 C6orf47O95873 294 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TSPAN19P0C672 248 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 NPPBP16860 134 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 RBMS1P29558 406 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 EMP2P54851 167 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ZIK1Q3SY52 487 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ELOA3BQ3SY89 546 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 CYBRD1Q53TN4 286 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 OR4C11Q6IEV9 310 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PGM2L1Q6PCE3 622 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 DNM1P34Q6PK57 102 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PPP1R3BQ86XI6 285 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ZNF595Q8IYB9 648 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 BPIFB6Q8NFQ5 453 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ELOA3Q8NG57 546 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 OR8J2Q8NGG1 315 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 FAM81AQ8TBF8 368 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SLC37A2Q8TED4 501 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TBC1D20Q96BZ9 403 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 DOHHQ9BU89 302 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SGPP1Q9BX95 441 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PCDHGB1Q9Y5G3 927 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 AK5Q9Y6K8 562 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SCDO00767 359 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 KIF1CO43896 1103 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 DNAJB5O75953 348 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 CD160O95971 181 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ADAP00813 363 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SERPINA1P01009 418 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 DBIP07108 87 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PSPHP78330 225 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SIM1P81133 766 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 E2F1Q01094 437 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 GAS6Q14393 721 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 CTSL3PQ5NE16 218 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ZNF551Q7Z340 670 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SERPINA11Q86U17 422 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PACS2Q86VP3 889 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 RASGRP3Q8IV61 690 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 CCDC116Q8IYX3 515 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ENDOVQ8N8Q3 282 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 OR4C6Q8NH72 309 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ABTB1Q969K4 478 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TGM7Q96PF1 710 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 MTHFD2LQ9H903 347 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 EBF2Q9HAK2 575 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 MTCH2Q9Y6C9 303 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 NOTCH3Q9UM47 2321 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ZNF860A6NHJ4 632 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SAP18O00422 153 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 BCKDKO14874 412 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 MOSPD3O75425 235 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TSPAN12O95859 305 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 HSD11B2P80365 405 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 NPTX1Q15818 432 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PDSS1Q5T2R2 415 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM64Q6YI46 380 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 CAMKMTQ7Z624 323 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 VWA5B2Q8N398 1253 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 OR2L3Q8NG85 312 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 OR7A2PQ8NGA2 310 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 WDR36Q8NI36 951 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SLC22A8Q8TCC7 542 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 RHBDD1Q8TEB9 315 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 DGCR14Q96DF8 476 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 AURKBQ96GD4 344 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 MRGPRX3Q96LB0 322 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TEX101Q9BY14 249 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 MS4A8Q9BY19 250 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 ACPTQ9BZG2 426 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 NUAK2Q9H093 628 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TAS2R7Q9NYW3 318 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 IGF2RP11717 2491 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM202A6NGA9 273 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 RGS10O43665 173 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TRIM3O75382 744 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 VNN2O95498 520 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 F7P08709 466 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 EFNA1P20827 205 aaPredicted RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms