RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 IGSF8Q969P0 613 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 PIP5K1AQ99755 562 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MMP28Q9H239 520 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 ABCD2Q9UBJ2 740 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 GLI3P10071 1580 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MEIOCA2RUB1 952 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MYADML2A6NDP7 307 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 FAAHO00519 579 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MAFKO60675 156 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 VNN2O95498 520 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 CDKN2CP42773 168 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 LEPRP48357 1165 aaKnown RBP11.05□□□□□ -0.64
VPS39-201ENST00000318006 RASGEF1BQ0VAM2 473 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 GPRC6AQ5T6X5 926 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 ZFAND4Q86XD8 727 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 GID4Q8IVV7 300 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MAPK15Q8TD08 544 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MOCOSQ96EN8 888 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 CD244Q9BZW8 370 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 GPR83Q9NYM4 423 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 FBXL3Q9UKT7 428 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 FARSAQ9Y285 508 aaKnown RBP11.05□□□□□ -0.64
VPS39-201ENST00000318006 HEBP2Q9Y5Z4 205 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 ANKRD36CQ5JPF3 1778 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 TEX13CA0A0J9YWL9 993 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 A0A1W2PQL4 384 aaPredicted RBP11.05□□□□□ -0.64
VPS39-201ENST00000318006 MEIS3P2A8K0S8 358 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 LEFTY2O00292 366 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 SCAMP1O15126 338 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 EDIL3O43854 480 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MATN4O95460 622 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 GKN3PP0CG01 181 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 C1QTNF8P60827 252 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 PROX2Q3B8N5 592 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 BCL2L15Q5TBC7 163 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 ENPP6Q6UWR7 440 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 ZNF783Q6ZMS7 281 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 SSX6Q7RTT6 188 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 FAM129CQ86XR2 697 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 OR51G2Q8NGK0 314 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 GNPDA2Q8TDQ7 276 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 C7orf34Q96L11 122 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 YIPF4Q9BSR8 244 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 SRMSQ9H3Y6 488 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 DPEP2Q9H4A9 486 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 GNG8Q9UK08 70 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MBLAC1A4D2B0 266 aaPredicted RBP11.04□□□□□ -0.64
VPS39-201ENST00000318006 SCGB1D2O95969 90 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 SRCP12931 536 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 CD1DP15813 335 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 UGT2B10P36537 528 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 TEAD2Q15562 447 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 SLC27A4Q6P1M0 643 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 OR8K5Q8NH50 307 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 GPR151Q8TDV0 419 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 TCTEX1D2Q8WW35 142 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 NWD2Q9ULI1 1742 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 CLDN4O14493 209 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 COQ9O75208 318 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 KLK1P06870 262 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 CHRNB1P11230 501 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 BMP8BP34820 402 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 GALEQ14376 348 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 MAD2L1BPQ15013 274 aaPredicted RBP11.04□□□□□ -0.64
VPS39-201ENST00000318006 TRAM2Q15035 370 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 SLC36A3Q495N2 470 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 GXYLT1Q4G148 440 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 BMP8AQ7Z5Y6 402 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 SLC44A3Q8N4M1 653 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 NSUN5Q96P11 429 aaKnown RBP11.04□□□□□ -0.64
VPS39-201ENST00000318006 TLR9Q9NR96 1032 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 CREBZFQ9NS37 354 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 EDDM13A0A1B0GTR0 161 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 VILLO15195 856 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 SOCS5O75159 536 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 PFKMP08237 780 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 ACP5P13686 325 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 CFL1P23528 166 aaKnown RBP11.04□□□□□ -0.64
VPS39-201ENST00000318006 AGTR2P50052 363 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 PTCHD3Q3KNS1 767 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 C2orf27AQ580R0 203 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 LY6G5CQ5SRR4 150 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 AGAP7PQ5VUJ5 663 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 SLC22A10Q63ZE4 541 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 GTF2IRD2BQ6EKJ0 949 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 GTF2IRD2Q86UP8 949 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 CHCHD4Q8N4Q1 142 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 JAGN1Q8N5M9 183 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 PROKR2Q8NFJ6 384 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 OR2L8Q8NGY9 312 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 RHOXF1Q8NHV9 184 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 ZCCHC10Q8TBK6 192 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 IL12RB2Q99665 862 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS39-201ENST00000318006 MRPS30Q9NP92 439 aaKnown RBP11.04□□□□□ -0.64
VPS39-201ENST00000318006 B4GALT6Q9UBX8 382 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 KAT6AQ92794 2004 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 AKAP11Q9UKA4 1901 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 OAZ2O95190 189 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 C6orf47O95873 294 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms