RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ERVK-18Q9QC07 812 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 VPS29Q9UBQ0 182 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 UNCXA6NJT0 531 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 F8W036 122 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 NIPSNAP2O75323 286 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 T-ENOLP0DO92 83 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 BLOC1S1P78537 153 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 EMX2Q04743 252 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 SLC10A2Q12908 348 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OR8J3Q8NGG0 315 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OR13C4Q8NGS5 318 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 CYP2S1Q96SQ9 504 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 B3GAT2Q9NPZ5 323 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 FAIMQ9NVQ4 179 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 ICKQ9UPZ9 632 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 NOX1Q9Y5S8 564 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 A0A1B0GVI7 797 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 FAM170BA6NMN3 283 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 MANBAO00462 879 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 SDHDO14521 159 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 FPR1P21462 350 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 GCAP28676 217 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 NKAPLQ5M9Q1 402 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OR4C15Q8NGM1 316 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 CDK15Q96Q40 435 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OTOL1A6NHN0 477 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CAPN5O15484 640 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 RNASEH2AO75792 299 aaKnown RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 EPOP01588 193 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CD1DP15813 335 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 NCS1P62166 190 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 TECRLQ5HYJ1 363 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 THEM6Q8WUY1 208 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 SRRDQ9UH36 339 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 PCTPQ9UKL6 214 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 GOSR2O14653 212 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 NRP1O14786 923 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 PRAMEF11O60813 436 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CDK14O94921 469 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 HOXD8P13378 290 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 STT3AP46977 705 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 DGKEP52429 567 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 TAS2R50P59544 299 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 TLE3Q04726 772 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 MS4A13Q5J8X5 152 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 OR6Q1Q8NGQ2 317 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CCM2LQ9NUG4 571 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 DNAJB5O75953 348 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 GNRHRP30968 328 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 UFM1P61960 85 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 BORAQ6PGQ7 559 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 EXOSC1Q9Y3B2 195 aaKnown RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF175Q9Y473 711 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 NOTCH3Q9UM47 2321 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF705GA8MUZ8 300 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 PTTG1O95997 202 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 BMP8BP34820 402 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 WNT7BP56706 349 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 AARDQ4LEZ3 155 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 UBXN11Q5T124 520 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 GOLGA7Q7Z5G4 137 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 BMP8AQ7Z5Y6 402 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 DPF3Q92784 378 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CDKN2AIPNLQ96HQ2 116 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 KATNBL1Q9H079 304 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 KCNK13Q9HB14 408 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 MCCC2Q9HCC0 563 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF334Q9HCZ1 680 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 HCRTO43612 131 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 PENKP01210 267 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 BCHEP06276 602 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CDK2P24941 298 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 MLLT10P55197 1068 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 PPP1R3AQ16821 1122 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 DCST2Q5T1A1 773 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 SLC2A7Q6PXP3 512 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CARM1Q86X55 608 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CHCHD4Q8N4Q1 142 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 COQ10AQ96MF6 247 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 RPS10P5Q9NQ39 176 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 ERVK13-1Q9NX77 482 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 TRIOBPQ9H2D6 2365 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 SLC34A2O95436 690 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 RAB3BP20337 219 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 PPP5CP53041 499 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 MC2RQ01718 297 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 PSRC1Q6PGN9 363 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 RNF130Q86XS8 419 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CNIH3Q8TBE1 160 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 HCAR2Q8TDS4 363 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CIDECQ96AQ7 238 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 SCRN2Q96FV2 425 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 EXTL2Q9UBQ6 330 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 CPQQ9Y646 472 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 DUXAA6NLW8 204 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 PAHP00439 452 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 IFNGR1P15260 489 aa9.48□□□□□ -0.89
COL6A3-201ENST00000295550 ARSJQ5FYB0 599 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-201ENST00000295550 BORCS7Q96B45 105 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms