RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 HYAL2Q12891 473 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 ISLR2Q6UXK2 745 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 GALNT5Q7Z7M9 940 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 OR2A1Q8NGT9 310 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 MIPOL1Q8TD10 442 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 TMBIM1Q969X1 311 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 OR8D2Q9GZM6 311 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 ZDBF2Q9HCK1 2354 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 CYP4B1P13584 511 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 RPS26P62854 115 aaKnown RBP11□□□□□ -0.65
VPS4A-201ENST00000254950 COL9A2Q14055 689 aaPredicted RBP11□□□□□ -0.65
VPS4A-201ENST00000254950 PGM2L1Q6PCE3 622 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 GPR141Q7Z602 305 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 BBS10Q8TAM1 723 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 FAM110BQ8TC76 370 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 YIPF3Q9GZM5 350 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 GAREM1Q9H706 876 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 USE1Q9NZ43 259 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 PRODH2Q9UF12 536 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF225Q9UK10 706 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 SOX30O94993 753 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 DNAJA1P31689 397 aaKnown RBP11□□□□□ -0.65
VPS4A-201ENST00000254950 TXNL4AP83876 142 aaKnown RBP11□□□□□ -0.65
VPS4A-201ENST00000254950 KCNC4Q03721 635 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 UGT8Q16880 541 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 C6orf52Q5T4I8 152 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 FAAH2Q6GMR7 532 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 SLC29A4Q7RTT9 530 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 DTWD1Q8N5C7 304 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 EID2Q8N6I1 236 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 WDR20Q8TBZ3 569 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 RHBDD1Q8TEB9 315 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 CCDC115Q96NT0 180 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 GPATCH1Q9BRR8 931 aaKnown RBP11□□□□□ -0.65
VPS4A-201ENST00000254950 ADI1Q9BV57 179 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 OR51I1Q9H343 314 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 EHD3Q9NZN3 535 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 SLAMF8Q9P0V8 285 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 MAP10Q9P2G4 905 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 TLCD2A6NGC4 264 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 UGT2B11O75310 529 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 RGNQ15493 299 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 ABI3BPQ7Z7G0 1075 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 ZCCHC7Q8N3Z6 543 aaKnown RBP11□□□□□ -0.65
VPS4A-201ENST00000254950 SVOPQ8N4V2 548 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 PJA1Q8NG27 643 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF563Q8TA94 476 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 PUM2Q8TB72 1066 aaKnown RBP eCLIP11□□□□□ -0.65
VPS4A-201ENST00000254950 RSC1A1Q92681 617 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 TANKQ92844 425 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 TEX37Q96LM6 180 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 MAP3K3Q99759 626 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 STARD5Q9NSY2 213 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 ACSS1Q9NUB1 689 aaPredicted RBP11□□□□□ -0.65
VPS4A-201ENST00000254950 C19orf25Q9UFG5 118 aaPredicted RBP11□□□□□ -0.65
VPS4A-201ENST00000254950 NAALAD2Q9Y3Q0 740 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 PTPRDP23468 1912 aa11□□□□□ -0.65
VPS4A-201ENST00000254950 MYOCOSA0A1B0GUC4 107 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SERPINI2O75830 405 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SORBS2O94875 1100 aaKnown RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 JMJD7P0C870 316 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 ANXA8P13928 327 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 ENPP2Q13822 863 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SLC5A12Q1EHB4 618 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 ABHD17CQ6PCB6 329 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 APLFQ8IW19 511 aaPredicted RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 CADM2Q8N3J6 435 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 TEX47Q8TBZ9 253 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 NACC2Q96BF6 587 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SLC38A2Q96QD8 506 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 CTPS2Q9NRF8 586 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 EBF1Q9UH73 591 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 LMO7DNF2Z398 122 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SGK494L7N484 410 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 PDLIM1O00151 329 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 PLPP1O14494 284 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 NME6O75414 186 aaPredicted RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 OR6A2O95222 327 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SOD1P00441 154 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 HIST1H2ABP04908 130 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 FURINP09958 794 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 FPR1P21462 350 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 IL12AP29459 219 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 KIAA1614Q5VZ46 1190 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 HIST3H2AQ7L7L0 130 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 NAGSQ8N159 534 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 BPIFB6Q8NFQ5 453 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 HIST1H2ACQ93077 130 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 ELF4Q99607 663 aaPredicted RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SRPK3Q9UPE1 567 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 PLXNA3P51805 1871 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 HYKKA2RU49 373 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SLC25A12O75746 678 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 NME1P15531 152 aaKnown RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 TSFMP43897 325 aaKnown RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 POU6F2P78424 691 aaPredicted RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 PPP1R8Q12972 351 aaKnown RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SERTAD2Q14140 314 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 FZD2Q14332 565 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 DECR1Q16698 335 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms