RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TRA2AQ13595 282 aaKnown RBP eCLIP13.02□□□□□ -0.33
LDLR-201ENST00000252444 RNF130Q86XS8 419 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 OR7A2PQ8NGA2 310 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 ANKRD49Q8WVL7 239 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 PRDM9Q9NQV7 894 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 PCDH10Q9P2E7 1040 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 SLC7A8Q9UHI5 535 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 TMEM233B4DJY2 109 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 LINGO3P0C6S8 592 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 HSD11B2P80365 405 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 IQCCQ4KMZ1 466 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 FBXO48Q5FWF7 155 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 NANOGP8Q6NSW7 305 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 UNQ6126/PRO20091Q6UXV3 157 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 BHLHA9Q7RTU4 235 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 INSM2Q96T92 566 aaPredicted RBP13.01□□□□□ -0.33
LDLR-201ENST00000252444 NANOGQ9H9S0 305 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 COMMD3-BMI1R4GMX3 469 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 A0A1W2PPC4 97 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 FAM25AB3EWG3 89 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 FAM25CB3EWG5 89 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 FAM25GB3EWG6 89 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 SNX4O95219 450 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 SOX9P48436 509 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 TRIQKQ629K1 86 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 PPP1R3BQ86XI6 285 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 DND1Q8IYX4 353 aaKnown RBP13.01□□□□□ -0.33
LDLR-201ENST00000252444 ENDOVQ8N8Q3 282 aaKnown RBP13.01□□□□□ -0.33
LDLR-201ENST00000252444 FAM81AQ8TBF8 368 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 F2RL3Q96RI0 385 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 CCNL2Q96S94 520 aaPredicted RBP13.01□□□□□ -0.33
LDLR-201ENST00000252444 A0A1W2PRG6 482 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 CISD3P0C7P0 127 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 FEN1P39748 380 aaKnown RBP13.01□□□□□ -0.33
LDLR-201ENST00000252444 CDHR3Q6ZTQ4 885 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 NANOGNBQ7Z5D8 188 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 ZNF683Q8IZ20 524 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 EFHD2Q96C19 240 aaPredicted RBP13.01□□□□□ -0.33
LDLR-201ENST00000252444 FBRSL1Q9HCM7 1045 aaKnown RBP13.01□□□□□ -0.33
LDLR-201ENST00000252444 LRIT1Q9P2V4 623 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 SLC6A5Q9Y345 797 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 PRSS21Q9Y6M0 314 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 SCN10AQ9Y5Y9 1956 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 ABCB7O75027 752 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 ANGPTL1O95841 491 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 APOC1P02654 83 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 DMPKQ09013 629 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 TMED1Q13445 227 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 MZT2BQ6NZ67 158 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 C6orf120Q7Z4R8 191 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 KCNA7Q96RP8 456 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 CCM2LQ9NUG4 571 aaPredicted RBP13.01□□□□□ -0.33
LDLR-201ENST00000252444 PPT2Q9UMR5 302 aa13.01□□□□□ -0.33
LDLR-201ENST00000252444 SLC30A4O14863 429 aa13□□□□□ -0.33
LDLR-201ENST00000252444 KLK8O60259 260 aa13□□□□□ -0.33
LDLR-201ENST00000252444 GABBR2O75899 941 aa13□□□□□ -0.33
LDLR-201ENST00000252444 PABPC4LP0CB38 370 aaKnown RBP13□□□□□ -0.33
LDLR-201ENST00000252444 GGT1P19440 569 aa13□□□□□ -0.33
LDLR-201ENST00000252444 S100GP29377 79 aa13□□□□□ -0.33
LDLR-201ENST00000252444 ACTC1P68032 377 aa13□□□□□ -0.33
LDLR-201ENST00000252444 ACTA1P68133 377 aa13□□□□□ -0.33
LDLR-201ENST00000252444 COX10Q12887 443 aa13□□□□□ -0.33
LDLR-201ENST00000252444 PYCR3Q53H96 274 aa13□□□□□ -0.33
LDLR-201ENST00000252444 BIRC7Q96CA5 298 aa13□□□□□ -0.33
LDLR-201ENST00000252444 IFT27Q9BW83 186 aa13□□□□□ -0.33
LDLR-201ENST00000252444 PCDHB16Q9NRJ7 776 aa13□□□□□ -0.33
LDLR-201ENST00000252444 EXOSC1Q9Y3B2 195 aaKnown RBP13□□□□□ -0.33
LDLR-201ENST00000252444 E7ENX8 843 aa13□□□□□ -0.33
LDLR-201ENST00000252444 XRCC1P18887 633 aaPredicted RBP13□□□□□ -0.33
LDLR-201ENST00000252444 HNRNPFP52597 415 aaKnown RBP13□□□□□ -0.33
LDLR-201ENST00000252444 C1orf61Q13536 156 aa13□□□□□ -0.33
LDLR-201ENST00000252444 TMEM198Q66K66 360 aa13□□□□□ -0.33
LDLR-201ENST00000252444 MYLIPQ8WY64 445 aa13□□□□□ -0.33
LDLR-201ENST00000252444 DPH2Q9BQC3 489 aaPredicted RBP13□□□□□ -0.33
LDLR-201ENST00000252444 EFCAB9A8MZ26 197 aa13□□□□□ -0.33
LDLR-201ENST00000252444 NPIPA5E9PKD4 350 aa13□□□□□ -0.33
LDLR-201ENST00000252444 C8BP07358 591 aa13□□□□□ -0.33
LDLR-201ENST00000252444 ETS2P15036 469 aa13□□□□□ -0.33
LDLR-201ENST00000252444 AQP1P29972 269 aa13□□□□□ -0.33
LDLR-201ENST00000252444 DEFB134Q4QY38 66 aa13□□□□□ -0.33
LDLR-201ENST00000252444 NDUFAF5Q5TEU4 345 aa13□□□□□ -0.33
LDLR-201ENST00000252444 FAM109BQ6ICB4 259 aaPredicted RBP13□□□□□ -0.33
LDLR-201ENST00000252444 CBR4Q8N4T8 237 aa13□□□□□ -0.33
LDLR-201ENST00000252444 DEFB119Q8N690 84 aa13□□□□□ -0.33
LDLR-201ENST00000252444 NSUN5Q96P11 429 aaKnown RBP13□□□□□ -0.33
LDLR-201ENST00000252444 OR51I1Q9H343 314 aa13□□□□□ -0.33
LDLR-201ENST00000252444 ASB6Q9NWX5 421 aa13□□□□□ -0.33
LDLR-201ENST00000252444 PPP4R1LQ9P1A2 415 aa13□□□□□ -0.33
LDLR-201ENST00000252444 NPIPA1Q9UND3 350 aa13□□□□□ -0.33
LDLR-201ENST00000252444 PRR23D1E9PI22 279 aaPredicted RBP13□□□□□ -0.33
LDLR-201ENST00000252444 KPNA4O00629 521 aaPredicted RBP13□□□□□ -0.33
LDLR-201ENST00000252444 AURKAO14965 403 aa13□□□□□ -0.33
LDLR-201ENST00000252444 PRR23D2P0DMB1 279 aaPredicted RBP13□□□□□ -0.33
LDLR-201ENST00000252444 UGT2B7P16662 529 aa13□□□□□ -0.33
LDLR-201ENST00000252444 HK1P19367 917 aa13□□□□□ -0.33
LDLR-201ENST00000252444 FKBP2P26885 142 aaKnown RBP13□□□□□ -0.33
LDLR-201ENST00000252444 PBX2P40425 430 aa13□□□□□ -0.33
LDLR-201ENST00000252444 TARDBPQ13148 414 aaKnown RBP eCLIP13□□□□□ -0.335e-13■■□□□ 13.5
LDLR-201ENST00000252444 TUBB3Q13509 450 aa13□□□□□ -0.33
LDLR-201ENST00000252444 GPR68Q15743 365 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms