RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 CNRIP1Q96F85 164 aaPredicted RBP17.14■□□□□ 0.33
VIM-201ENST00000224237 TGM7Q96PF1 710 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 LYRM4Q9HD34 91 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 KCMF1Q9P0J7 381 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 RPS6KA6Q9UK32 745 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 PADI4Q9UM07 663 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 HCRTR1O43613 425 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 PRKD3O94806 890 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 TLX1P31314 330 aaPredicted RBP17.14■□□□□ 0.33
VIM-201ENST00000224237 KDELR2P33947 212 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 GPC1P35052 558 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 GPR3P46089 330 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 PRIM2P49643 509 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 CDK9P50750 372 aaKnown RBP17.14■□□□□ 0.33
VIM-201ENST00000224237 GFERP55789 205 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 C16orf72Q14CZ0 275 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 ATP6AP1Q15904 470 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 FAM86B1Q8N7N1 296 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 NCSTNQ92542 709 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 ZC3H10Q96K80 434 aaKnown RBP17.14■□□□□ 0.33
VIM-201ENST00000224237 DUSP23Q9BVJ7 150 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 CHRNA10Q9GZZ6 450 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 NLGN3Q9NZ94 848 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 MRPS2Q9Y399 296 aaKnown RBP17.14■□□□□ 0.33
VIM-201ENST00000224237 ZNF780BQ9Y6R6 833 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 SPACA6W5XKT8 324 aa17.14■□□□□ 0.33
VIM-201ENST00000224237 ARID1BQ8NFD5 2236 aaPredicted RBP17.13■□□□□ 0.33
VIM-201ENST00000224237 SCN3AQ9NY46 2000 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 A0A1B0GTQ1 180 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 WASHC1A8K0Z3 465 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 VGLL3A8MV65 326 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 DUX1O43812 170 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 GALR3O60755 368 aaPredicted RBP17.13■□□□□ 0.33
VIM-201ENST00000224237 CSNK2A2P19784 350 aaPredicted RBP17.13■□□□□ 0.33
VIM-201ENST00000224237 MPIP34949 423 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 MLLT3P42568 568 aaPredicted RBP17.13■□□□□ 0.33
VIM-201ENST00000224237 CCT8P50990 548 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 GPLD1P80108 840 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 RUNX2Q13950 521 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 NR1D2Q14995 579 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 OR52E8Q6IFG1 317 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 CEP68Q76N32 757 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 SAMD14Q8IZD0 417 aaPredicted RBP17.13■□□□□ 0.33
VIM-201ENST00000224237 CARFQ8N187 725 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 MAL2Q969L2 176 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 PYURFQ96I23 114 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 TMEM121BQ9BXQ6 578 aaPredicted RBP17.13■□□□□ 0.33
VIM-201ENST00000224237 SEMA3GQ9NS98 782 aa17.13■□□□□ 0.33
VIM-201ENST00000224237 IGHV1OR21-1A0A087WYE8 117 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 FAM149AA5PLN7 773 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 KIF1CO43896 1103 aaKnown RBP17.12■□□□□ 0.33
VIM-201ENST00000224237 LDLRP01130 860 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 CNR2P34972 360 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 CCT3P49368 545 aaKnown RBP17.12■□□□□ 0.33
VIM-201ENST00000224237 CASP9P55211 416 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 NKAIN2Q5VXU1 208 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 TMEM64Q6YI46 380 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 GATAD2AQ86YP4 633 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 SUN3Q8TAQ9 357 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 C10orf90Q96M02 699 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 BDH2Q9BUT1 245 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 NPLQ9BXD5 320 aaPredicted RBP17.12■□□□□ 0.33
VIM-201ENST00000224237 PDE7BQ9NP56 450 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 SOHLH2Q9NX45 425 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 NAALAD2Q9Y3Q0 740 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 WDR87Q6ZQQ6 2873 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 DEAF1O75398 565 aaPredicted RBP17.12■□□□□ 0.33
VIM-201ENST00000224237 C9P02748 559 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 MT-ND1P03886 318 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 ALPPL2P10696 532 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 HOXD12P35452 270 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 OR1D5P58170 312 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 DSTNP60981 165 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 SKP1P63208 163 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 BLMHQ13867 455 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 SCARB2Q14108 478 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 ZNF630Q2M218 657 aaPredicted RBP17.12■□□□□ 0.33
VIM-201ENST00000224237 PRTGQ2VWP7 1150 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 INTS11Q5TA45 600 aaKnown RBP17.12■□□□□ 0.33
VIM-201ENST00000224237 CEACAM20Q6UY09 585 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 PRSS41Q7RTY9 318 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 C6orf120Q7Z4R8 191 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 SLC30A8Q8IWU4 369 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 CCDC116Q8IYX3 515 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 ARHGEF39Q8N4T4 335 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 SFXN5Q8TD22 340 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 ZNF681Q96N22 645 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 BTBD9Q96Q07 612 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 CIB1Q99828 191 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 ANKHQ9HCJ1 492 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 STARD5Q9NSY2 213 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 SPEGQ15772 3267 aa17.12■□□□□ 0.33
VIM-201ENST00000224237 ASXL3Q9C0F0 2248 aa17.11■□□□□ 0.33
VIM-201ENST00000224237 PCDH15Q96QU1 1955 aa17.11■□□□□ 0.33
VIM-201ENST00000224237 ADAMTS9Q9P2N4 1935 aa17.11■□□□□ 0.33
VIM-201ENST00000224237 IGHV5-51A0A0C4DH38 117 aa17.11■□□□□ 0.33
VIM-201ENST00000224237 ZNF860A6NHJ4 632 aa17.11■□□□□ 0.33
VIM-201ENST00000224237 PATE3B3GLJ2 98 aa17.11■□□□□ 0.33
VIM-201ENST00000224237 YKT6O15498 198 aa17.11■□□□□ 0.33
VIM-201ENST00000224237 ZBTB11O95625 1053 aaPredicted RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms