RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 DCCP43146 1447 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MANBAO00462 879 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 XYLBO75191 536 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OR4F21O95013 312 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CXCL8P10145 99 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CAMLGP49069 296 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CAPSQ13938 189 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TOR2AQ5JU69 321 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FRG2Q64ET8 278 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ABLIM2Q6H8Q1 611 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF565Q8N9K5 539 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CHAC2Q8WUX2 184 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 EDEM1Q92611 657 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PPP1R14AQ96A00 147 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 C16orf58Q96GQ5 468 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FRG2BQ96QU4 278 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ACO2Q99798 780 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ABCG4Q9H172 646 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CDT1Q9H211 546 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MKKSQ9NPJ1 570 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FAM212BQ9NTI7 297 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SPATA31A3Q5VYP0 1347 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 RPL10P27635 214 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MAP3K8P41279 467 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ERVFC1P60507 584 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GHRHRQ02643 423 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PAN3Q58A45 887 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 IL34Q6ZMJ4 242 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GPR149Q86SP6 731 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PCSK9Q8NBP7 692 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OR10Z1Q8NGY1 313 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MALSU1Q96EH3 234 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MED8Q96G25 268 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OSGIN1Q9UJX0 560 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FZD4Q9ULV1 537 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OR2A25A4D2G3 310 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 E2F3O00716 465 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SIGLEC6O43699 453 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 RENP00797 406 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TEX30Q5JUR7 227 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SLC9B2Q86UD5 537 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 KCNRGQ8N5I3 272 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM163Q8TC26 289 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 BRIX1Q8TDN6 353 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM125Q96AQ2 219 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PCDHB7Q9Y5E2 793 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 HYKKA2RU49 373 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PI15O43692 258 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 STSP08842 583 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TGM1P22735 817 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GABRB3P28472 473 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MAP2K4P45985 399 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CXCR3P49682 368 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GDF10P55107 478 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 DBPQ10586 325 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 DYRK1AQ13627 763 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MAPK14Q16539 360 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CDC42EP5Q6NZY7 148 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SMARCD3Q6STE5 483 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 C16orf59Q7L2K0 433 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 LDB1Q86U70 411 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SUMF2Q8NBJ7 301 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 DCPSQ96C86 337 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ASF1BQ9NVP2 202 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CYP8B1Q9UNU6 501 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 NME4O00746 187 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FADS1O60427 444 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PTPRAP18433 802 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 EPORP19235 508 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PCSK6P29122 969 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ARF5P84085 180 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SLC6A19Q695T7 634 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SPATC1Q76KD6 591 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GPAT4Q86UL3 456 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OR1J2Q8NGS2 313 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 POC1BQ8TC44 478 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 KCTD13Q8WZ19 329 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SEC22CQ9BRL7 303 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CDCA4Q9BXL8 241 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 AGO1Q9UL18 857 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ENPP4Q9Y6X5 453 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 BTBD17A6NE02 478 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 KCNK2O95069 426 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ENGP17813 658 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SPAM1P38567 509 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GIPRP48546 466 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CPT1AP50416 773 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 LAPTM4AQ15012 233 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM41BQ5BJD5 291 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PXDC1Q5TGL8 231 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 STK35Q8TDR2 534 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 RNF128Q8TEB7 428 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TRAPPC12Q8WVT3 735 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PYCR2Q96C36 320 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SLC7A5P2Q9GIP4 190 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 EIF5A2Q9GZV4 153 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ASH2LQ9UBL3 628 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF629Q9UEG4 869 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 DNMT3LQ9UJW3 386 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 C20orf202A1L168 122 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms