RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PATE3B3GLJ2 98 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 ERAL1O75616 437 aaKnown RBP15.94■□□□□ 0.14
CLN3-252ENST00000636907 NR2F6P10588 404 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 GPR3P46089 330 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 CDK9P50750 372 aaKnown RBP15.94■□□□□ 0.14
CLN3-252ENST00000636907 CASP9P55211 416 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 MAP7Q14244 749 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 NR1D2Q14995 579 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 C16orf72Q14CZ0 275 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 MLC1Q15049 377 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 VMACQ2NL98 169 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 AMZ1Q400G9 498 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 ERICH5Q6P6B1 374 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 KBTBD2Q8IY47 623 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 ARHGEF39Q8N4T4 335 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 OR52E4Q8NGH9 312 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 AMDHD1Q96NU7 426 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 BBS4Q96RK4 519 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 CD180Q99467 661 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 DUSP23Q9BVJ7 150 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 SPATA9Q9BWV2 254 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 ZSCAN32Q9NX65 697 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 RAPGEFL1Q9UHV5 662 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 PADI4Q9UM07 663 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 DAPP1Q9UN19 280 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 C15orf41Q9Y2V0 281 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 SLC22A7Q9Y694 548 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 LAMA1P25391 3075 aa15.94■□□□□ 0.14
CLN3-252ENST00000636907 PI4KAP42356 2102 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 RNF103-CHMP3A0A140T963 221 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 MYO1GB0I1T2 1018 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 DUX1O43812 170 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 SRPX2O60687 465 aaPredicted RBP15.93■□□□□ 0.14
CLN3-252ENST00000636907 GALR3O60755 368 aaPredicted RBP15.93■□□□□ 0.14
CLN3-252ENST00000636907 KRT75O95678 551 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 ETFAP13804 333 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 CPN2P22792 545 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 NTSP30990 170 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 BUD31P41223 144 aaPredicted RBP15.93■□□□□ 0.14
CLN3-252ENST00000636907 MLLT3P42568 568 aaPredicted RBP15.93■□□□□ 0.14
CLN3-252ENST00000636907 CRATP43155 626 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 GABRA4P48169 554 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 NCBP2P52298 156 aaKnown RBP eCLIP15.93■□□□□ 0.14
CLN3-252ENST00000636907 CFHR1Q03591 330 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 DUSP2Q05923 314 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 LRRC36Q1X8D7 754 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 ZNF750Q32MQ0 723 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 HMBOX1Q6NT76 420 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 RNF130Q86XS8 419 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 PSMA8Q8TAA3 256 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 CNRIP1Q96F85 164 aaPredicted RBP15.93■□□□□ 0.14
CLN3-252ENST00000636907 C10orf90Q96M02 699 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 CSF3RQ99062 836 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 SEPHS2Q99611 448 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 EPB41L1Q9H4G0 881 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 GAREM1Q9H706 876 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 CAPN10Q9HC96 672 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 SOHLH2Q9NX45 425 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 NAALAD2Q9Y3Q0 740 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 MAP4K5Q9Y4K4 846 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 PCDH15Q96QU1 1955 aa15.93■□□□□ 0.14
CLN3-252ENST00000636907 A0A1W2PS29 197 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 TPST1O60507 370 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 RETP07949 1114 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 SP9P0CG40 484 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 C8orf89P0DMQ9 161 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 CSF2RBP32927 897 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 HOXD12P35452 270 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 GPLD1P80108 840 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 PRTGQ2VWP7 1150 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 OGFRL1Q5TC84 451 aaPredicted RBP15.92■□□□□ 0.14
CLN3-252ENST00000636907 SAXO2Q658L1 398 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ERMP1Q7Z2K6 904 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 SHISA5Q8N114 240 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 FAM86B1Q8N7N1 296 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ZBTB44Q8NCP5 570 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 PAPD5Q8NDF8 572 aaKnown RBP15.92■□□□□ 0.14
CLN3-252ENST00000636907 OR5T3Q8NGG3 340 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 OR4C6Q8NH72 309 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 SUN3Q8TAQ9 357 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 FBXO30Q8TB52 745 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 MAL2Q969L2 176 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 CCDC74AQ96AQ1 378 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 NEURL3Q96EH8 262 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 SEMA6AQ9H2E6 1030 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 LYRM4Q9HD34 91 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 PDE7BQ9NP56 450 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 DCAF13Q9NV06 445 aaKnown RBP15.92■□□□□ 0.14
CLN3-252ENST00000636907 PLCL2Q9UPR0 1127 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ENTPD4Q9Y227 616 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 TXNDC9O14530 226 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 CASC3O15234 703 aaKnown RBP15.92■□□□□ 0.14
CLN3-252ENST00000636907 HNRNPRO43390 633 aaKnown RBP15.92■□□□□ 0.14
CLN3-252ENST00000636907 B4GALT2O60909 372 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 TNFRSF21O75509 655 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ZBTB11O95625 1053 aaPredicted RBP15.92■□□□□ 0.14
CLN3-252ENST00000636907 SERPINA1P01009 418 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 ALPPL2P10696 532 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 CD1CP29017 333 aa15.92■□□□□ 0.14
CLN3-252ENST00000636907 FEN1P39748 380 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms