RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SLC35C2Q9NQQ7 365 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 LYARQ9NX58 379 aaKnown RBP18.99■□□□□ 0.63
CLN3-250ENST00000636839 TMEM184BQ9Y519 407 aaPredicted RBP18.99■□□□□ 0.63
CLN3-250ENST00000636839 RALGAPA1Q6GYQ0 2036 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 IGHV5-10-1A0A0J9YXX1 117 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 TBX19O60806 448 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 BCAS2O75934 225 aaPredicted RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 GSTM5P46439 218 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 MANFP55145 182 aaKnown RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 EEFSECP57772 596 aaKnown RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 MAT1AQ00266 395 aaKnown RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 SPEM2Q0P670 501 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 SYT16Q17RD7 645 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 C6orf163Q5TEZ5 329 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 SLC48A1Q6P1K1 146 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 DBX2Q6ZNG2 339 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 CA13Q8N1Q1 262 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 RHBDD1Q8TEB9 315 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 PYDC1Q8WXC3 89 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 CNDP2Q96KP4 475 aaKnown RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 RBCK1Q9BYM8 510 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 CHRNA10Q9GZZ6 450 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 GLIPR2Q9H4G4 154 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 TPT1P8Q9HAU6 139 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 ANKHQ9HCJ1 492 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 DNAAF2Q9NVR5 837 aaKnown RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 TAS2R7Q9NYW3 318 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 SNX8Q9Y5X2 465 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 C15orf38-AP3S2A0A0A6YYH1 394 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 NR2F6P10588 404 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 ATP6V1B2P21281 511 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 CDK9P50750 372 aaKnown RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 GZMMP51124 257 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 SHC2P98077 582 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 TNFRSF17Q02223 184 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 ID2Q02363 134 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 SQSTM1Q13501 440 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 RIPK1Q13546 671 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 C16orf72Q14CZ0 275 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 ARPINQ7Z6K5 226 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 CCDC116Q8IYX3 515 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 PRSS33Q8NF86 280 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 DNAJB8Q8NHS0 232 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 GOT1L1Q8NHS2 421 aaPredicted RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 SLC26A7Q8TE54 656 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 PHF12Q96QT6 1004 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 ROGDIQ9GZN7 287 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 ZNF768Q9H5H4 540 aaKnown RBP18.98■□□□□ 0.63
CLN3-250ENST00000636839 GPATCH2Q9NW75 528 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 TAS2R9Q9NYW1 312 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 HCN3Q9P1Z3 774 aa18.98■□□□□ 0.63
CLN3-250ENST00000636839 ASCC3Q8N3C0 2202 aaKnown RBP18.97■□□□□ 0.63
CLN3-250ENST00000636839 OR2B3O76000 313 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 RETP07949 1114 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 FRKP42685 505 aaPredicted RBP18.97■□□□□ 0.63
CLN3-250ENST00000636839 COX20Q5RI15 118 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 ZFP90Q8TF47 636 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 DPH2Q9BQC3 489 aaPredicted RBP18.97■□□□□ 0.63
CLN3-250ENST00000636839 FAM86C1Q9NVL1 165 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 EHD3Q9NZN3 535 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 VPS4AQ9UN37 437 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 PCDHGB4Q9UN71 923 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 WDFY3Q8IZQ1 3526 aa18.97■□□□□ 0.63
CLN3-250ENST00000636839 OR2W5A6NFC9 320 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 CYR61O00622 381 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 CHST10O43529 356 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 HYAL3O43820 417 aaPredicted RBP18.96■□□□□ 0.63
CLN3-250ENST00000636839 B4GALT2O60909 372 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 GUCY1B2O75343 617 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 GRK6P43250 576 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.96■□□□□ 0.63
CLN3-250ENST00000636839 ARHGAP22Q7Z5H3 698 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 SPPL2CQ8IUH8 684 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 SUN3Q8TAQ9 357 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 DOK4Q8TEW6 326 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 CCDC74BQ96LY2 380 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 AMDHD1Q96NU7 426 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 SLC35A5Q9BS91 424 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 RPF2Q9H7B2 306 aaKnown RBP18.96■□□□□ 0.63
CLN3-250ENST00000636839 SIRT3Q9NTG7 399 aaPredicted RBP18.96■□□□□ 0.63
CLN3-250ENST00000636839 MAU2Q9Y6X3 613 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 PSMG1O95456 288 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 NUDT7P0C024 238 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 ZNF806P0C7X5 589 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 ZNF883P0CG24 379 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 CD59P13987 128 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 ZNF10P21506 573 aaPredicted RBP18.96■□□□□ 0.63
CLN3-250ENST00000636839 SOAT1P35610 550 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 NCBP2P52298 156 aaKnown RBP eCLIP18.96■□□□□ 0.63
CLN3-250ENST00000636839 ERV3-1Q14264 604 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 B3GNT8Q7Z7M8 397 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 CARFQ8N187 725 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 OR4D9Q8NGE8 314 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 ZNF681Q96N22 645 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 LRFN3Q9BTN0 628 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 ANKRA2Q9H9E1 313 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 LYRM4Q9HD34 91 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 PDP2Q9P2J9 529 aa18.96■□□□□ 0.63
CLN3-250ENST00000636839 DHCR7Q9UBM7 475 aaKnown RBP18.96■□□□□ 0.63
CLN3-250ENST00000636839 FITM1A5D6W6 292 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms