RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TRIB2Q92519 343 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 SLC39A13Q96H72 371 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.56□□□□□ -0.72
CLN3-244ENST00000636147 ZCCHC3Q9NUD5 404 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 MRPL15Q9P015 296 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 TMPRSS11EQ9UL52 423 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 MCM3APO60318 1980 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 RTCAO00442 366 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 KHDRBS3O75525 346 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 RAB36O95755 333 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 C1QCP02747 245 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 BMP1P13497 986 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 MAZP56270 477 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 POLR2LP62875 67 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 ZNF630Q2M218 657 aaPredicted RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 COX20Q5RI15 118 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 CXXC5Q7LFL8 322 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 HUS1BQ8NHY5 278 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 ISG20Q96AZ6 181 aaKnown RBP10.56□□□□□ -0.72
CLN3-244ENST00000636147 TADA1Q96BN2 335 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 TMEM169Q96HH4 297 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 OR2A14Q96R47 310 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 RABL2BQ9UNT1 228 aa10.56□□□□□ -0.72
CLN3-244ENST00000636147 MBLAC1A4D2B0 266 aaPredicted RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 WASHC1A8K0Z3 465 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 TEX46H3BTG2 121 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 JUPP14923 745 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 BMP7P18075 431 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 HOXA9P31269 272 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 MAPK8P45983 427 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 PPP3R1P63098 170 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 TIAL1Q01085 375 aaKnown RBP eCLIP10.55□□□□□ -0.72
CLN3-244ENST00000636147 PCDH1Q08174 1060 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 SLC35F1Q5T1Q4 408 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 TMEM220Q6QAJ8 160 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 FAM92BQ6ZTR7 304 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 OR52P1PQ8NH57 321 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 REEP4Q9H6H4 257 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 PAK6Q9NQU5 681 aaPredicted RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 NANSQ9NR45 359 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 GTF2A1LQ9UNN4 478 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 SH3D21A4FU49 640 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 SCAMP2O15127 329 aaKnown RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 SMAD6O43541 496 aaKnown RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 NAT1P18440 290 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 PTGER1P34995 402 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 AP1S2P56377 157 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 HBA1P69905 142 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 CAMK2BQ13554 666 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 NTRK2Q16620 822 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 C9orf131Q5VYM1 1079 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 SLX4IPQ5VYV7 408 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 SIGIRRQ6IA17 410 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 FUT10Q6P4F1 479 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 Q6ZVL8 140 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 BHLHA9Q7RTU4 235 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 PLCZ1Q86YW0 608 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 OR51G2Q8NGK0 314 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 FOXJ1Q92949 421 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 P2RY13Q9BPV8 354 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 C3orf14Q9HBI5 128 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 MED16Q9Y2X0 877 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 A3GALT2U3KPV4 340 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 MTMR11A4FU01 709 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 B4DXG7 233 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 FABP7O15540 132 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 ANXA3P12429 323 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 RHCEP18577 417 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 CD6P30203 668 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 ACSL1P33121 698 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 RPS5P46782 204 aaKnown RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 ANXA11P50995 505 aaKnown RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 ZNF157P51786 506 aaPredicted RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 TSPAN5P62079 268 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 ACVR1Q04771 509 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 ZNF763Q0D2J5 394 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 ELAVL2Q12926 359 aaKnown RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 C9orf64Q5T6V5 341 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 IL20RBQ6UXL0 311 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 SLC24A5Q71RS6 500 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 ZNF551Q7Z340 670 aaPredicted RBP10.55□□□□□ -0.72
CLN3-244ENST00000636147 TRIM46Q7Z4K8 759 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 COMMD7Q86VX2 200 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 KLBQ86Z14 1044 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 SLC43A3Q8NBI5 491 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 GALNT11Q8NCW6 608 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 RAD51AP1Q96B01 352 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 GSDMCQ9BYG8 508 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 GPR62Q9BZJ7 368 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 DPAGT1Q9H3H5 408 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 KCNK12Q9HB15 430 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 SLC52A3Q9NQ40 469 aa10.55□□□□□ -0.72
CLN3-244ENST00000636147 M0R233 179 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 CHST10O43529 356 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 AKAP8O43823 692 aaKnown RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 ASGR1P07306 291 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 CYP2A6P11509 494 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 CCR7P32248 378 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 SSR2P43308 183 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 STK19P49842 368 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 210.1 ms