RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 COPS7AQ9UBW8 275 aa13.54□□□□□ -0.24
PNKP-218ENST00000625299 IKZF3Q9UKT9 509 aa13.54□□□□□ -0.24
PNKP-218ENST00000625299 BOKQ9UMX3 212 aaPredicted RBP13.54□□□□□ -0.24
PNKP-218ENST00000625299 FREM3P0C091 2139 aa13.54□□□□□ -0.24
PNKP-218ENST00000625299 C15orf38-AP3S2A0A0A6YYH1 394 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 LRIT2A6NDA9 550 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 LDB3O75112 727 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 H2AFYO75367 372 aaKnown RBP13.53□□□□□ -0.24
PNKP-218ENST00000625299 LRATO95237 230 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 EPXP11678 715 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 PCSK6P29122 969 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 AGFG1P52594 562 aaKnown RBP13.53□□□□□ -0.24
PNKP-218ENST00000625299 LIM2P55344 173 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 NKX6-1P78426 367 aaPredicted RBP13.53□□□□□ -0.24
PNKP-218ENST00000625299 ID2Q02363 134 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 SLBPQ14493 270 aaKnown RBP eCLIP13.53□□□□□ -0.24
PNKP-218ENST00000625299 CRYMQ14894 314 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 ACSF3Q4G176 576 aaPredicted RBP13.53□□□□□ -0.24
PNKP-218ENST00000625299 SLC22A10Q63ZE4 541 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 TRIM40Q6P9F5 258 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 PRIMA1Q86XR5 153 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 GABPB2Q8TAK5 448 aaPredicted RBP13.53□□□□□ -0.24
PNKP-218ENST00000625299 ARSGQ96EG1 525 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 SIGLEC10Q96LC7 697 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 VTI1BQ9UEU0 232 aa13.53□□□□□ -0.24
PNKP-218ENST00000625299 FOXD3Q9UJU5 478 aaPredicted RBP13.53□□□□□ -0.24
PNKP-218ENST00000625299 NINQ8N4C6 2090 aa13.52□□□□□ -0.24
PNKP-218ENST00000625299 SYNDIG1LA6NDD5 238 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 NPEPPSL1A6NEC2 478 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 CLCA1A8K7I4 914 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 EEF1E1-BLOC1S5C9J1V9 151 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 CYR61O00622 381 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 EEF1E1O43324 174 aaKnown RBP13.52□□□□□ -0.25
PNKP-218ENST00000625299 CTNSO60931 367 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 WDR47O94967 919 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 LY6G6DO95868 133 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 IL2RAP01589 272 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 AHSGP02765 367 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 CCDC175P0C221 793 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 PGAM1P18669 254 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 CXCR5P32302 372 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 MAGEA3P43357 314 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 MTTPP55157 894 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 RCN2Q14257 317 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 FBXL19-AS1Q494R0 122 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 TTC27Q6P3X3 843 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 SBSNQ6UWP8 590 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 TMIGD1Q6UXZ0 262 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 MAATS1Q7Z4T9 603 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 KIF18BQ86Y91 864 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 KRTAP1-3Q8IUG1 177 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 FAM13CQ8NE31 585 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 TTLQ8NG68 377 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 OR8K3Q8NH51 312 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 NEIL3Q8TAT5 605 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 SLC22A8Q8TCC7 542 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 QRFPRQ96P65 431 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 SERINC2Q96SA4 455 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 REXO4Q9GZR2 422 aaKnown RBP13.52□□□□□ -0.25
PNKP-218ENST00000625299 PLEKHF2Q9H8W4 249 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 ZFP64Q9NPA5 681 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 PPANQ9NQ55 473 aaKnown RBP13.52□□□□□ -0.25
PNKP-218ENST00000625299 DAPP1Q9UN19 280 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 KIAA1549Q9HCM3 1950 aa13.52□□□□□ -0.25
PNKP-218ENST00000625299 ANKDD1BA6NHY2 528 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 LRRC3CA6NJW4 275 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 FAM171A2A8MVW0 826 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 CDC7O00311 574 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 ETHE1O95571 254 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 C1GALT1C1LP0DN25 315 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 GNAZP19086 355 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 GDF1P27539 372 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 ZNF136P52737 540 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 SERTAD2Q14140 314 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 EFTUD2Q15029 972 aaKnown RBP eCLIP13.51□□□□□ -0.254e-7■■■□□ 19.2
PNKP-218ENST00000625299 PPP1R3AQ16821 1122 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 C18orf21Q32NC0 220 aaPredicted RBP13.51□□□□□ -0.25
PNKP-218ENST00000625299 LACC1Q8IV20 430 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 KRT78Q8N1N4 520 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 OR2L5Q8NG80 312 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 EPB41L4BQ9H329 900 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 BEX4Q9NWD9 120 aaPredicted RBP13.51□□□□□ -0.25
PNKP-218ENST00000625299 ZNF629Q9UEG4 869 aaPredicted RBP13.51□□□□□ -0.25
PNKP-218ENST00000625299 PCDHGB3Q9Y5G1 929 aa13.51□□□□□ -0.25
PNKP-218ENST00000625299 CSPG4Q6UVK1 2322 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 AHRRA9YTQ3 701 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 SMAD7O15105 426 aaKnown RBP13.5□□□□□ -0.25
PNKP-218ENST00000625299 BANF1O75531 89 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 EPPINO95925 133 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 COX7A2P14406 83 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 CD53P19397 219 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 CEACAM8P31997 349 aaPredicted RBP13.5□□□□□ -0.25
PNKP-218ENST00000625299 GDF5P43026 501 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 DUSP8Q13202 625 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 MPEG1Q2M385 716 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 ZNF791Q3KP31 576 aaPredicted RBP13.5□□□□□ -0.25
PNKP-218ENST00000625299 PIGGQ5H8A4 983 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 Q5PR19 223 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 SHEQ5VZ18 495 aa13.5□□□□□ -0.25
PNKP-218ENST00000625299 ADNP2Q6IQ32 1131 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms