RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 REEP5Q00765 189 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 MEF2AQ02078 507 aaPredicted RBP11.91□□□□□ -0.5
PNKP-217ENST00000625216 Q0VFX4 171 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 HERC3Q15034 1050 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 FRG2Q64ET8 278 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 FAM91A1Q658Y4 838 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 ZNF771Q7L3S4 317 aaPredicted RBP11.91□□□□□ -0.5
PNKP-217ENST00000625216 TREML1Q86YW5 311 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 ZC3H7AQ8IWR0 971 aaKnown RBP11.91□□□□□ -0.5
PNKP-217ENST00000625216 ZNF740Q8NDX6 193 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 CEP70Q8NHQ1 597 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 SELENOMQ8WWX9 145 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 C8orf44Q96CB5 159 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 TUBGCP3Q96CW5 907 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 LRRC37BQ96QE4 947 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 FRG2BQ96QU4 278 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 EFCAB11Q9BUY7 163 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 ACPTQ9BZG2 426 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 ZNF700Q9H0M5 742 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 CLK4Q9HAZ1 481 aaKnown RBP11.91□□□□□ -0.5
PNKP-217ENST00000625216 ZBTB20Q9HC78 741 aaPredicted RBP11.91□□□□□ -0.5
PNKP-217ENST00000625216 MKL2Q9ULH7 1088 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 ZNF490Q9ULM2 529 aaPredicted RBP11.91□□□□□ -0.5
PNKP-217ENST00000625216 SNX6Q9UNH7 406 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 MRPS2Q9Y399 296 aaKnown RBP11.91□□□□□ -0.5
PNKP-217ENST00000625216 RELNP78509 3460 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 SERTM1A2A2V5 107 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 URADA6NGE7 173 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 LSM1O15116 133 aaKnown RBP11.9□□□□□ -0.5
PNKP-217ENST00000625216 OR1F1O43749 312 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 CCDC22O60826 627 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 PEX11AO75192 247 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 ALOX12BO75342 701 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 C8orf89P0DMQ9 161 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 LBPP18428 481 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 NCF2P19878 526 aaPredicted RBP11.9□□□□□ -0.5
PNKP-217ENST00000625216 AHRP35869 848 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 SCTRP47872 440 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 MAT1AQ00266 395 aaKnown RBP11.9□□□□□ -0.5
PNKP-217ENST00000625216 HMGCS1Q01581 520 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 RGS1Q08116 209 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 MFAP5Q13361 173 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 TLR1Q15399 786 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 NR6A1Q15406 480 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 SYT16Q17RD7 645 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 GALNTL6Q49A17 601 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 CRB2Q5IJ48 1285 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 SPDYAQ5MJ70 313 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 OGFOD2Q6N063 350 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 MED27Q6P2C8 311 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 CHSY3Q70JA7 882 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 TRIM46Q7Z4K8 759 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 LAS2Q8IYD9 372 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 KCT2Q8NC54 265 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 TRPV3Q8NET8 790 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 OR7G3Q8NG95 312 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 OR51Q1Q8NH59 317 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 DNAJB14Q8TBM8 379 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 SNRNP40Q96DI7 357 aaKnown RBP11.9□□□□□ -0.5
PNKP-217ENST00000625216 MTFMTQ96DP5 389 aaKnown RBP11.9□□□□□ -0.5
PNKP-217ENST00000625216 AIF1LQ9BQI0 150 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 TUBB6Q9BUF5 446 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 CCDC106Q9BWC9 280 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 ELOVL6Q9H5J4 265 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 LUZP4Q9P127 313 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 C19orf25Q9UFG5 118 aaPredicted RBP11.9□□□□□ -0.5
PNKP-217ENST00000625216 COPG1Q9Y678 874 aaKnown RBP11.9□□□□□ -0.5
PNKP-217ENST00000625216 LRRK2Q5S007 2527 aa11.9□□□□□ -0.5
PNKP-217ENST00000625216 PRRC2CQ9Y520 2896 aaKnown RBP11.89□□□□□ -0.51
PNKP-217ENST00000625216 SPENQ96T58 3664 aaKnown RBP11.89□□□□□ -0.51
PNKP-217ENST00000625216 HECTD1Q9ULT8 2610 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 SGK494L7N484 410 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 SLC28A1O00337 649 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 NDUFS4O43181 175 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 ULK1O75385 1050 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 STATHP02808 62 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 PCNAP12004 261 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 CD1EP15812 388 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 IL1RNP18510 177 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 GNLYP22749 145 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 XCR1P46094 333 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 LAPTM5Q13571 262 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 DDX39BQ13838 428 aaKnown RBP11.89□□□□□ -0.51
PNKP-217ENST00000625216 PAGE2BQ5JRK9 111 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 C6orf136Q5SQH8 315 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 FHL5Q5TD97 284 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 METTL21CQ5VZV1 264 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 B3GNTL1Q67FW5 361 aaPredicted RBP11.89□□□□□ -0.51
PNKP-217ENST00000625216 VN1R5Q7Z5H4 357 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 CISD2Q8N5K1 135 aaKnown RBP11.89□□□□□ -0.51
PNKP-217ENST00000625216 NT5CQ8TCD5 201 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 PSMF1Q92530 271 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 IMMP1LQ96LU5 166 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 OR1F2PQ96R84 312 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 BARD1Q99728 777 aaKnown RBP11.89□□□□□ -0.51
PNKP-217ENST00000625216 CCT7Q99832 543 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 MACROD1Q9BQ69 325 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 MESP1Q9BRJ9 268 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 VN1R1Q9GZP7 353 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 AGPAT4Q9NRZ5 378 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms