RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 RASGRP1O95267 797 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 C9P02748 559 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 PCSK2P16519 638 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 RPL3P39023 403 aaKnown RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 ACTR1BP42025 376 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 MAP2K4P45985 399 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 IDH2P48735 452 aaKnown RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 ACTR1AP61163 376 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 NDUFAF5Q5TEU4 345 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 XAF1Q6GPH4 301 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 PGBD3Q8N328 593 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 HDAC2Q92769 488 aaKnown RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 GTPBP3Q969Y2 492 aaKnown RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 COG8Q96MW5 612 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 PELI2Q9HAT8 420 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 WASH6PQ9NQA3 447 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 ERVK-18Q9QC07 812 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 PIAS3Q9Y6X2 628 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 hCG_2014768A0A024R1R8 64 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 PRSS38A1L453 326 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 TRIM64CA6NLI5 447 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 B4GALT2O60909 372 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 ABCB7O75027 752 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 INMTO95050 263 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 CD247P20963 164 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 LSM3P62310 102 aaKnown RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 RPP38P78345 283 aaKnown RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 CBX3Q13185 183 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 RPE65Q16518 533 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 IFI44LQ53G44 452 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 SFTPA2Q8IWL1 248 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 NLGN4XQ8N0W4 816 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 SLC5A8Q8N695 610 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 ZBTB8BQ8NAP8 495 aaPredicted RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 GOT1L1Q8NHS2 421 aaPredicted RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 RPLP0P6Q8NHW5 317 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 UTP15Q8TED0 518 aaKnown RBP11.79□□□□□ -0.52
CIITA-212ENST00000618207 DOK4Q8TEW6 326 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 LZICQ8WZA0 190 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 OR1E3Q8WZA6 343 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 TMEM168Q9H0V1 697 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 IRF2BPLQ9H1B7 796 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 S1PR5Q9H228 398 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 RHBGQ9H310 441 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 SLC6A20Q9NP91 592 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 SNX5Q9Y5X3 404 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 LYVE1Q9Y5Y7 322 aa11.79□□□□□ -0.52
CIITA-212ENST00000618207 TRBC2A0A5B9 178 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 BTN3A3O00478 584 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 PGRMC2O15173 223 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 TPST2O60704 377 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 KRT75O95678 551 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 ZNF182P17025 639 aaPredicted RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 GRK3P35626 688 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 FEN1P39748 380 aaKnown RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 NPRL3Q12980 569 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 ADAM15Q13444 863 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 EXOC3L2Q2M3D2 409 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 RFX4Q33E94 735 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 RBM48Q5RL73 367 aaKnown RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 C10orf62Q5T681 223 aaPredicted RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 OR4C11Q6IEV9 310 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 TMEM92Q6UXU6 159 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 C6orf120Q7Z4R8 191 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 ZNF540Q8NDQ6 660 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 OR10G6Q8NH81 332 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 SLC38A5Q8WUX1 472 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 LCN9Q8WX39 176 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 PATE1Q8WXA2 126 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 NODALQ96S42 347 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 NIPSNAP1Q9BPW8 284 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 KCNK12Q9HB15 430 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 CTPS2Q9NRF8 586 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 SLC17A4Q9Y2C5 497 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 DNMT3AQ9Y6K1 912 aaPredicted RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 TRIOBPQ9H2D6 2365 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 LRIT2A6NDA9 550 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 PCDH17O14917 1159 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 UQCRC2P22695 453 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 CERS1P27544 350 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 PEBP1P30086 187 aaKnown RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 SNRPNP63162 240 aaKnown RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 SLAMF1Q13291 335 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 SKIV2LQ15477 1246 aaKnown RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 KIAA1614Q5VZ46 1190 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 C18orf63Q68DL7 685 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 B3GNT8Q7Z7M8 397 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 CCDC71Q8IV32 467 aaPredicted RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 ERI1Q8IV48 349 aaKnown RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 CCDC116Q8IYX3 515 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 ADAMTS16Q8TE57 1224 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 GIPC3Q8TF64 312 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 HMGB4Q8WW32 186 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 TMEM19Q96HH6 336 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 MRGPRX1Q96LB2 322 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 PCBD2Q9H0N5 130 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 EQTNQ9NQ60 294 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 FAM32AQ9Y421 112 aaKnown RBP11.78□□□□□ -0.52
CIITA-212ENST00000618207 PCDHGB3Q9Y5G1 929 aa11.78□□□□□ -0.52
CIITA-212ENST00000618207 FANCMQ8IYD8 2048 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms