RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PRAMEF17Q5VTA0 474 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 FAM180BQ6P0A1 224 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TMED4Q7Z7H5 227 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF101Q8IZC7 436 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 HS3ST5Q8IZT8 346 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 C3orf30Q96M34 536 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 DPH7Q9BTV6 452 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 OR8D2Q9GZM6 311 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 C11orf49Q9H6J7 331 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 CDH10Q9Y6N8 788 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 FXYD6-FXYD2A0A087WZ82 144 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GRXCR1A8MXD5 290 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 FLRT2O43155 660 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GSRP00390 522 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 PGAM2P15259 253 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 RHCEP18577 417 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 VAMP1P23763 118 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SOX2P48431 317 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SLAMF1Q13291 335 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 DECR1Q16698 335 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TBRG1Q3YBR2 411 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SCGB2B2Q4G0G5 96 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 C22orf42Q6IC83 251 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 STX12Q86Y82 276 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SLC5A8Q8N695 610 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 BBS10Q8TAM1 723 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 NETO1Q8TDF5 533 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 EPYCQ99645 322 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 FXYD6Q9H0Q3 95 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 MAGIXQ9H6Y5 334 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 KCNK12Q9HB15 430 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 CLDND1Q9NY35 253 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GPR83Q9NYM4 423 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 MTRF1O75570 445 aaKnown RBP13.43□□□□□ -0.26
CPSF1-212ENST00000616140 IFNA7P01567 189 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GPX3P22352 226 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 LARP4Q71RC2 724 aaKnown RBP eCLIP13.43□□□□□ -0.262e-8■□□□□ 8.4
CPSF1-212ENST00000616140 PAQR7Q86WK9 346 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TMEM25Q86YD3 366 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 ADGRG5Q8IZF4 528 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TMEM151AQ8N4L1 468 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TSTD1Q8NFU3 115 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 OR5T3Q8NGG3 340 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SHKBP1Q8TBC3 707 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF689Q96CS4 500 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-212ENST00000616140 HRASLS2Q9NWW9 162 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TMEM181Q9P2C4 612 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SARDHQ9UL12 918 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GMEB1Q9Y692 573 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 PTPRZ1P23471 2315 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-212ENST00000616140 COL2A1P02458 1487 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-212ENST00000616140 CSF2RAP15509 400 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 CBLP22681 906 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 PYCR1P32322 319 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 CEBPGP53567 150 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 ARPC4P59998 168 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 RPL6Q02878 288 aaKnown RBP13.42□□□□□ -0.26
CPSF1-212ENST00000616140 CRTC1Q6UUV9 634 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 COMMD6Q7Z4G1 85 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF615Q8N8J6 731 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 OR2T33Q8NG76 320 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 LHPPQ9H008 270 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 IRF2BPLQ9H1B7 796 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 BACE2Q9Y5Z0 518 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 A0A1W2PP55 124 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF670-ZNF695F2Z2N8 137 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 GPR39O43194 453 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 RFPL2O75678 378 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 PENKP01210 267 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-212ENST00000616140 TNFP01375 233 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF20P17024 532 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 MLLT3P42568 568 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-212ENST00000616140 RCAN2Q14206 197 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.42□□□□□ -0.26
CPSF1-212ENST00000616140 CCDC107Q8WV48 283 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 RHBDF1Q96CC6 855 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 SLC30A3Q99726 388 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 INPP5KQ9BT40 448 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 C12orf4Q9NQ89 552 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF69Q9UC07 566 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 MYH1P12882 1939 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 FBP2O00757 339 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 STOMP27105 288 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 SHMT2P34897 504 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 HK3P52790 923 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 INHBCP55103 352 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 KLHL26Q53HC5 615 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 C12orf76Q8N812 135 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-212ENST00000616140 DRAXINQ8NBI3 349 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-212ENST00000616140 PLA2G15Q8NCC3 412 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 CHST14Q8NCH0 376 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 NUP43Q8NFH3 380 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 OR8K3Q8NH51 312 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.42□□□□□ -0.268e-13■■□□□ 11.7
CPSF1-212ENST00000616140 GNPDA2Q8TDQ7 276 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 NR4A3Q92570 626 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 SLC12A9Q9BXP2 914 aa13.42□□□□□ -0.26
CPSF1-212ENST00000616140 ISPDA4D126 451 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 B4GAT1O43505 415 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CNMDO75829 334 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms