RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 A0A0G2JNJ9 132 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 GOLGA6L10A0A0M3HER8 536 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 A0A1B0GTL3 188 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 ATP6AP2A0A1C7CYW4 349 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 TUBAL3A6NHL2 446 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 TP53I11O14683 189 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 ERI3O43414 337 aaKnown RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 ATP6AP2O75787 350 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 OR6B1O95007 311 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 GUCA1CO95843 209 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 KRT14P02533 472 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 CCDC175P0C221 793 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 C1GALT1C1LP0DN25 315 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 EPXP11678 715 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 SERPINB3P29508 390 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 OPRM1P35372 400 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 TIMP3P35625 211 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 SOX3P41225 446 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 HNF4AP41235 474 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 MAGEA3P43357 314 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 MAGEA5P43359 124 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 KCNC1P48547 511 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 TMED10P49755 219 aaKnown RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 HK2P52789 917 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 RNF4P78317 190 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 LTBQ06643 244 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 HYAL2Q12891 473 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 LAPTM5Q13571 262 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 CRYMQ14894 314 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 SIX1Q15475 284 aaPredicted RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 OCLNQ16625 522 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 TMEM35AQ53FP2 167 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 TOR1AIP1Q5JTV8 583 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 CDKL4Q5MAI5 379 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 TMEM198Q66K66 360 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 PAQR3Q6TCH7 311 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 DNAJC14Q6Y2X3 702 aaPredicted RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 PRUNE1Q86TP1 453 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 THOC6Q86W42 341 aaKnown RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 CNTN4Q8IWV2 1026 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 PPIL6Q8IXY8 311 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 KLHDC8AQ8IYD2 350 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 MMP21Q8N119 569 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 PYCR2Q96C36 320 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 RBM18Q96H35 190 aaKnown RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 ZFP3Q96NJ6 502 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 KCNC2Q96PR1 638 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 EGFL8Q99944 293 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 GPATCH1Q9BRR8 931 aaKnown RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 YIPF4Q9BSR8 244 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 TBCDQ9BTW9 1192 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 EFCAB11Q9BUY7 163 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 OR8D2Q9GZM6 311 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 REXO4Q9GZR2 422 aaKnown RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 ACBD3Q9H3P7 528 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 LYRM4Q9HD34 91 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 RRAGDQ9NQL2 400 aaPredicted RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 DLL4Q9NR61 685 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 IARS2Q9NSE4 1012 aaKnown RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 ZNF358Q9NW07 568 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 ALKBH4Q9NXW9 302 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 NSMCE4AQ9NXX6 385 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 CRIM1Q9NZV1 1036 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 Q9UFV3 132 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 ADAMTS6Q9UKP5 1117 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 PLEKHA6Q9Y2H5 1048 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 RPH3AQ9Y2J0 694 aaPredicted RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 VWA7Q9Y334 891 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 FAM215AQ9Y5M1 114 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 HRH3Q9Y5N1 445 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 IKBKGQ9Y6K9 419 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.82□□□□□ -1.481e-9■■□□□ 12.2
CUX1-220ENST00000607092 ZNF469Q96JG9 3925 aaPredicted RBP5.82□□□□□ -1.48
CUX1-220ENST00000607092 SCN3AQ9NY46 2000 aa5.82□□□□□ -1.48
CUX1-220ENST00000607092 DNHD1Q96M86 4753 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ARID1AO14497 2285 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ANKRD33BA6NCL7 494 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 LRIT2A6NDA9 550 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 WWP2O00308 870 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 CASKO14936 926 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 CLGNO14967 610 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ZNHIT1O43257 154 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 EPPINO95925 133 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 IL18BPO95998 194 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 HEXAP06865 529 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 INHBBP09529 407 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 BMP5P22003 454 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 TLX1P31314 330 aaPredicted RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 KCNJ1P48048 391 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 VPS41P49754 854 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ST13P50502 369 aaKnown RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 ARFIP1P53367 373 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 DLX5P56178 289 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 SNRPNP63162 240 aaKnown RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 ADAM8P78325 824 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 PLIN5Q00G26 463 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 FOXO1Q12778 655 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 RCAN2Q14206 197 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ADPRMQ3LIE5 342 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 PIGGQ5H8A4 983 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms