RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 C6orf141Q5SZD1 244 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 ZNF691Q5VV52 312 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 C18orf63Q68DL7 685 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 LAIR1Q6GTX8 287 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 KCTD8Q6ZWB6 473 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 CCDC80Q76M96 950 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 C6orf120Q7Z4R8 191 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 ACOT4Q8N9L9 421 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 KCT2Q8NC54 265 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 OR52J3Q8NH60 311 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 FLVCR1-AS1Q8TAF5 88 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 CNIH3Q8TBE1 160 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 SLC38A5Q8WUX1 472 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 OTUB1Q96FW1 271 aaPredicted RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 KLHL25Q9H0H3 589 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 RUBCNLQ9H714 662 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 FBXW2Q9UKT8 454 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 SH3GLB1Q9Y371 365 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 ASB4Q9Y574 426 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 HEBP2Q9Y5Z4 205 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 COMMD3-BMI1R4GMX3 469 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 TDRD6O60522 2096 aaKnown RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 LRRC72A6NJI9 287 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 BCKDKO14874 412 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 SLC16A6O15403 523 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 SEMA4FO95754 770 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 BCHEP06276 602 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 CELA2BP08218 269 aaPredicted RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 EEF1B2P24534 225 aaKnown RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 ATP5A1P25705 553 aaKnown RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 CMPK1P30085 196 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 ARHGDIAP52565 204 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 PRRT3Q5FWE3 981 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 CRB2Q5IJ48 1285 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 OLIG3Q7RTU3 272 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 VN1R4Q7Z5H5 301 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 TTLQ8NG68 377 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 DNASE1L2Q92874 299 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 POLR1BQ9H9Y6 1135 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 OR6C2Q9NZP2 312 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 PCOLCE2Q9UKZ9 415 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 WBP11Q9Y2W2 641 aaKnown RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 LYVE1Q9Y5Y7 322 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 LRP4O75096 1905 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 PRAMEF27A3QJZ7 478 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 MAN2B1O00754 1011 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 ERAL1O75616 437 aaKnown RBP13.71□□□□□ -0.21
VRK3-217ENST00000599538 C9P02748 559 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 HTR1AP08908 422 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 C8orf89P0DMQ9 161 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 AHRP35869 848 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 TP53BP2Q13625 1128 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 NEDD8Q15843 81 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 TMEM35AQ53FP2 167 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 IFI44LQ53G44 452 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 ZC3H12BQ5HYM0 836 aaKnown RBP13.71□□□□□ -0.21
VRK3-217ENST00000599538 MRM1Q6IN84 353 aaKnown RBP13.71□□□□□ -0.21
VRK3-217ENST00000599538 PAQR7Q86WK9 346 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 SHISA5Q8N114 240 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 ATG16L2Q8NAA4 619 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 OR2L5Q8NG80 312 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 UBE2FQ969M7 185 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 ZBED6CLQ96FA7 236 aaPredicted RBP13.71□□□□□ -0.21
VRK3-217ENST00000599538 MAGED4Q96JG8 741 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 AMDHD1Q96NU7 426 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 SARGQ9BW04 601 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 YTHDF1Q9BYJ9 559 aaKnown RBP13.71□□□□□ -0.21
VRK3-217ENST00000599538 SRMSQ9H3Y6 488 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 RLIMQ9NVW2 624 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 CDC14AQ9UNH5 594 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 CYP8B1Q9UNU6 501 aa13.71□□□□□ -0.21
VRK3-217ENST00000599538 C10orf142B7Z368 130 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 HMGN4O00479 90 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 ITGAMP11215 1152 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 F3P13726 295 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 MAGP20916 626 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 CCT3P49368 545 aaKnown RBP13.7□□□□□ -0.22
VRK3-217ENST00000599538 LSAMPQ13449 338 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 GPR18Q14330 331 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 SLC9A5Q14940 896 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 RAB39AQ14964 217 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 SPDYE7PQ495Y7 208 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 TJAP1Q5JTD0 557 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 FAHD1Q6P587 224 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 SZRD1Q7Z422 152 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 CCDC71Q8IV32 467 aaPredicted RBP13.7□□□□□ -0.22
VRK3-217ENST00000599538 MFSD9Q8NBP5 474 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 OR5D16Q8NGK9 328 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 CNRIP1Q96F85 164 aaPredicted RBP13.7□□□□□ -0.22
VRK3-217ENST00000599538 TMEM19Q96HH6 336 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 MPP4Q96JB8 637 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 ZNF300Q96RE9 604 aaPredicted RBP13.7□□□□□ -0.22
VRK3-217ENST00000599538 NEUROD4Q9HD90 331 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 SLC35C2Q9NQQ7 365 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 PAK1IP1Q9NWT1 392 aaPredicted RBP13.7□□□□□ -0.22
VRK3-217ENST00000599538 TAS2R7Q9NYW3 318 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 USP36Q9P275 1121 aaKnown RBP13.7□□□□□ -0.22
VRK3-217ENST00000599538 ORC6Q9Y5N6 252 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 SCN2AQ99250 2005 aa13.7□□□□□ -0.22
VRK3-217ENST00000599538 TRIOBPQ9H2D6 2365 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms