RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 EVPLLA8MZ36 301 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 PGRMC2O15173 223 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 ERAL1O75616 437 aaKnown RBP14.39□□□□□ -0.11
TRIM28-209ENST00000597423 CPSF4O95639 269 aaKnown RBP14.39□□□□□ -0.11
TRIM28-209ENST00000597423 AGXTP21549 392 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 PPIBP23284 216 aaKnown RBP14.39□□□□□ -0.11
TRIM28-209ENST00000597423 WNT3P56703 355 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 PHC1P78364 1004 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 OLR1P78380 273 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 NHLH1Q02575 133 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 DSG2Q14126 1118 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 MLC1Q15049 377 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 ISXQ2M1V0 245 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 SPRED3Q2MJR0 410 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 CEACAM20Q6UY09 585 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 BNC2Q6ZN30 1099 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-209ENST00000597423 ZNF621Q6ZSS3 439 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 ASCL5Q7RTU5 278 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 PRSS41Q7RTY9 318 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 KIAA2013Q8IYS2 634 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 OR4A15Q8NGL6 344 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 OR51Q1Q8NH59 317 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 NUDT8Q8WV74 236 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 SLC45A3Q96JT2 553 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 THTPAQ9BU02 230 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 ASPSCR1Q9BZE9 553 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 SPAG4Q9NPE6 437 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 OCIAD1Q9NX40 245 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 ADA2Q9NZK5 511 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-209ENST00000597423 ASXL3Q9C0F0 2248 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 RP1P56715 2156 aa14.39□□□□□ -0.11
TRIM28-209ENST00000597423 ASPDHA6ND91 283 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 SYNDIG1LA6NDD5 238 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 GLOD5A6NK44 160 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CYR61O00622 381 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CTNSO60931 367 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 SCN2BO60939 215 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CSO75390 466 aaKnown RBP14.38□□□□□ -0.11
TRIM28-209ENST00000597423 GPR75O95800 540 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 ZCCHC18P0CG32 403 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 FBLP22087 321 aaKnown RBP14.38□□□□□ -0.11
TRIM28-209ENST00000597423 GCGRP47871 477 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 XKP51811 444 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 PCBP4P57723 403 aaKnown RBP14.38□□□□□ -0.11
TRIM28-209ENST00000597423 SHC2P98077 582 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 PLIN5Q00G26 463 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 ABHD18Q0P651 414 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 DCAF12Q5T6F0 453 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 DLEU7Q6UYE1 221 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 ANKRD46Q86W74 232 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CACTIN-AS1Q8N1I8 211 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 KIF2BQ8N4N8 673 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 OR8J3Q8NGG0 315 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 OR5T3Q8NGG3 340 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 DNAJB14Q8TBM8 379 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 TBC1D20Q96BZ9 403 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 LIN37Q96GY3 246 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-209ENST00000597423 OR1F2PQ96R84 312 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CDRT15Q96T59 188 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CGREF1Q99674 301 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 DPH2Q9BQC3 489 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-209ENST00000597423 NEUROD4Q9HD90 331 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 SEMA3GQ9NS98 782 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 TAS2R9Q9NYW1 312 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 HCN3Q9P1Z3 774 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 ZNF282Q9UDV7 671 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CES1P1Q9UKY3 287 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CORO2BQ9UQ03 480 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 LOXL2Q9Y4K0 774 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 MAP4K5Q9Y4K4 846 aa14.38□□□□□ -0.11
TRIM28-209ENST00000597423 SNRNP200O75643 2136 aaKnown RBP14.38□□□□□ -0.11
TRIM28-209ENST00000597423 CCDC187A0A096LP49 1063 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 MYO1GB0I1T2 1018 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 DNAJA2O60884 412 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 BMP10O95393 424 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 KLK3P07288 261 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 JMJD7P0C870 316 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 CEACAM1P13688 526 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 NQO1P15559 274 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 GPC1P35052 558 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 HSD17B7P56937 341 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 SIM1P81133 766 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 DCDP81605 110 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 ZNF385BQ569K4 471 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 SAMD4BQ5PRF9 694 aaKnown RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 LRIF1Q5T3J3 769 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 ARHGAP40Q5TG30 622 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 TMEM164Q5U3C3 297 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 PWWP2BQ6NUJ5 590 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 BHLHB9Q6PI77 547 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 DHRS13Q6UX07 377 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 MED25Q71SY5 747 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 RAB11FIP2Q7L804 512 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 MMP21Q8N119 569 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 BMPERQ8N8U9 685 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 GOT1L1Q8NHS2 421 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 FBXO27Q8NI29 283 aa14.37□□□□□ -0.11
TRIM28-209ENST00000597423 CIDECQ96AQ7 238 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-209ENST00000597423 PEX11GQ96HA9 241 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms