RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PTPMT1Q8WUK0 201 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-203ENST00000593582 TANKQ92844 425 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 NTMT1Q9BV86 223 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 RPF2Q9H7B2 306 aaKnown RBP14.23□□□□□ -0.13
TRIM28-203ENST00000593582 POLEQ07864 2286 aa14.23□□□□□ -0.13
TRIM28-203ENST00000593582 IQANK1A0A1B0GTG1 560 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 A0A1B0GUH1 482 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 A1L4Q6 167 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 ASPDHA6ND91 283 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 C17orf105B2RV13 164 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 NME2P1O60361 137 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 ITGA10O75578 1167 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 COX7A2P14406 83 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 NME2P22392 152 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 GCAP28676 217 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 BUD31P41223 144 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 SSR4P51571 173 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 TNFRSF17Q02223 184 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 ALDH6A1Q02252 535 aaKnown RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 ID2Q02363 134 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 SRSF11Q05519 484 aaKnown RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 RBPJQ06330 500 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 BIKQ13323 160 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 SLC29A2Q14542 456 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 TEX35Q5T0J7 233 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 FRG2Q64ET8 278 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 TTC19Q6DKK2 380 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 CYP20A1Q6UW02 462 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 HSDL2Q6YN16 418 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 LCA5Q86VQ0 697 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 ANKRD9Q96BM1 317 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 MTFMTQ96DP5 389 aaKnown RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 NSUN5Q96P11 429 aaKnown RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 FRG2BQ96QU4 278 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 SERPINI1Q99574 410 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 OR8D2Q9GZM6 311 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 LYARQ9NX58 379 aaKnown RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 FETUBQ9UGM5 382 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 ZNF223Q9UK11 482 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 PPT2Q9UMR5 302 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 YARS2Q9Y2Z4 477 aaKnown RBP14.22□□□□□ -0.13
TRIM28-203ENST00000593582 ATG4BQ9Y4P1 393 aa14.22□□□□□ -0.13
TRIM28-203ENST00000593582 NBPF19A0A087WUL8 3843 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 SPTBN1Q01082 2364 aaKnown RBP14.21□□□□□ -0.13
TRIM28-203ENST00000593582 DYRK3O43781 588 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 OTCP00480 354 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 RPS17P08708 135 aaKnown RBP14.21□□□□□ -0.13
TRIM28-203ENST00000593582 TAC1P20366 129 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 BSGP35613 385 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 IFT88Q13099 833 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.21□□□□□ -0.132e-9■□□□□ 11
TRIM28-203ENST00000593582 GGTA1PQ4G0N0 100 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 MILR1Q7Z6M3 343 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 NUDT13Q86X67 352 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 OR4N5Q8IXE1 308 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 CYP4Z2PQ8N1L4 340 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 RBM18Q96H35 190 aaKnown RBP14.21□□□□□ -0.13
TRIM28-203ENST00000593582 FRMD6Q96NE9 622 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 DGAT2Q96PD7 388 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 ZNF717Q9BY31 904 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-203ENST00000593582 TXLNGYQ9BZA5 131 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 ELOVL6Q9H5J4 265 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 DDX31Q9H8H2 851 aaKnown RBP14.21□□□□□ -0.13
TRIM28-203ENST00000593582 ZBTB26Q9HCK0 441 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 SEMA4BQ9NPR2 832 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-203ENST00000593582 PSMC3IPQ9P2W1 217 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-203ENST00000593582 MYOTQ9UBF9 498 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 COPS7AQ9UBW8 275 aa14.21□□□□□ -0.13
TRIM28-203ENST00000593582 SVILO95425 2214 aa14.21□□□□□ -0.14
TRIM28-203ENST00000593582 A0A0A6YYD5 115 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 A8MT66 165 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 PROM1O43490 865 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 FGF17O60258 216 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 PRKNO60260 465 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-203ENST00000593582 EEDO75530 441 aaKnown RBP14.2□□□□□ -0.14
TRIM28-203ENST00000593582 OR2J2O76002 312 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 SEMA3DO95025 777 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 ETHE1O95571 254 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 FAM58BPP0C7Q3 252 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 STT3AP46977 705 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 HNRNPH2P55795 449 aaKnown RBP14.2□□□□□ -0.14
TRIM28-203ENST00000593582 IGLV3-21P80748 117 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-203ENST00000593582 PLIN5Q00G26 463 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 FOLH1Q04609 750 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 TRAF3Q13114 568 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 KRTCAP3Q53RY4 240 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 C1QL3Q5VWW1 255 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 C18orf63Q68DL7 685 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 FJX1Q86VR8 437 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 ZNF227Q86WZ6 799 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 TMEM151AQ8N4L1 468 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 EIF1ADQ8N9N8 165 aaKnown RBP14.2□□□□□ -0.14
TRIM28-203ENST00000593582 OR5L2Q8NGL0 311 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 OR8K3Q8NH51 312 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 SLC2A12Q8TD20 617 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 ACMSDQ8TDX5 336 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 ZNF483Q8TF39 744 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-203ENST00000593582 ASB15Q8WXK1 588 aa14.2□□□□□ -0.14
TRIM28-203ENST00000593582 GPR137Q96N19 417 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms