RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 SLCO4A1Q96BD0 722 aa8.82□□□□□ -1
SS18-220ENST00000582092 MS4A6EQ96DS6 147 aa8.82□□□□□ -1
SS18-220ENST00000582092 AHCYL2Q96HN2 611 aaKnown RBP8.82□□□□□ -1
SS18-220ENST00000582092 PYURFQ96I23 114 aa8.82□□□□□ -1
SS18-220ENST00000582092 PHF12Q96QT6 1004 aa8.82□□□□□ -1
SS18-220ENST00000582092 OR2A14Q96R47 310 aa8.82□□□□□ -1
SS18-220ENST00000582092 NR1H4Q96RI1 486 aaPredicted RBP8.82□□□□□ -1
SS18-220ENST00000582092 ZFYVE21Q9BQ24 234 aa8.82□□□□□ -1
SS18-220ENST00000582092 SARGQ9BW04 601 aa8.82□□□□□ -1
SS18-220ENST00000582092 TCEAL2Q9H3H9 227 aaPredicted RBP8.82□□□□□ -1
SS18-220ENST00000582092 MAGIXQ9H6Y5 334 aa8.82□□□□□ -1
SS18-220ENST00000582092 RPF2Q9H7B2 306 aaKnown RBP8.82□□□□□ -1
SS18-220ENST00000582092 CAAP1Q9H8G2 361 aa8.82□□□□□ -1
SS18-220ENST00000582092 COQ10BQ9H8M1 238 aa8.82□□□□□ -1
SS18-220ENST00000582092 NEUROD4Q9HD90 331 aa8.82□□□□□ -1
SS18-220ENST00000582092 BATF3Q9NR55 127 aa8.82□□□□□ -1
SS18-220ENST00000582092 SEMA3GQ9NS98 782 aa8.82□□□□□ -1
SS18-220ENST00000582092 DCAF13Q9NV06 445 aaKnown RBP8.82□□□□□ -1
SS18-220ENST00000582092 EVA1BQ9NVM1 165 aa8.82□□□□□ -1
SS18-220ENST00000582092 IRAK4Q9NWZ3 460 aa8.82□□□□□ -1
SS18-220ENST00000582092 SCOCQ9UIL1 159 aa8.82□□□□□ -1
SS18-220ENST00000582092 PHF11Q9UIL8 331 aa8.82□□□□□ -1
SS18-220ENST00000582092 USP22Q9UPT9 525 aa8.82□□□□□ -1
SS18-220ENST00000582092 CLCA2Q9UQC9 943 aa8.82□□□□□ -1
SS18-220ENST00000582092 ORC6Q9Y5N6 252 aa8.82□□□□□ -1
SS18-220ENST00000582092 KNTC1P50748 2209 aa8.81□□□□□ -1
SS18-220ENST00000582092 GOLGA4Q13439 2230 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 IGKV1-8A0A0C4DH67 115 aa8.81□□□□□ -1
SS18-220ENST00000582092 A0A1B0GTQ1 180 aa8.81□□□□□ -1
SS18-220ENST00000582092 TCRBV5S2A0A599 114 aa8.81□□□□□ -1
SS18-220ENST00000582092 ZSCAN9O15535 394 aaPredicted RBP8.81□□□□□ -1
SS18-220ENST00000582092 AQP9O43315 295 aa8.81□□□□□ -1
SS18-220ENST00000582092 SUV39H1O43463 412 aa8.81□□□□□ -1
SS18-220ENST00000582092 TNFSF14O43557 240 aa8.81□□□□□ -1
SS18-220ENST00000582092 ERAL1O75616 437 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 PRKD3O94806 890 aa8.81□□□□□ -1
SS18-220ENST00000582092 UBXN7O94888 489 aa8.81□□□□□ -1
SS18-220ENST00000582092 ZNF888P0CJ79 500 aaPredicted RBP8.81□□□□□ -1
SS18-220ENST00000582092 CDK4P11802 303 aa8.81□□□□□ -1
SS18-220ENST00000582092 NME1P15531 152 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 TYRP1P17643 537 aa8.81□□□□□ -1
SS18-220ENST00000582092 CSNK2A2P19784 350 aaPredicted RBP8.81□□□□□ -1
SS18-220ENST00000582092 MAGP20916 626 aa8.81□□□□□ -1
SS18-220ENST00000582092 HIST1H1TP22492 207 aaPredicted RBP8.81□□□□□ -1
SS18-220ENST00000582092 CPN2P22792 545 aa8.81□□□□□ -1
SS18-220ENST00000582092 ATP5A1P25705 553 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 PEBP1P30086 187 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 MPIP34949 423 aa8.81□□□□□ -1
SS18-220ENST00000582092 AQP4P55087 323 aa8.81□□□□□ -1
SS18-220ENST00000582092 NXPH1P58417 271 aa8.81□□□□□ -1
SS18-220ENST00000582092 RAB8AP61006 207 aa8.81□□□□□ -1
SS18-220ENST00000582092 UBE2IP63279 158 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 HBA1P69905 142 aa8.81□□□□□ -1
SS18-220ENST00000582092 MRPS35P82673 323 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 RBBP4Q09028 425 aa8.81□□□□□ -1
SS18-220ENST00000582092 HSPB3Q12988 150 aa8.81□□□□□ -1
SS18-220ENST00000582092 TP53BP2Q13625 1128 aa8.81□□□□□ -1
SS18-220ENST00000582092 VEZF1Q14119 521 aa8.81□□□□□ -1
SS18-220ENST00000582092 GNA13Q14344 377 aa8.81□□□□□ -1
SS18-220ENST00000582092 NRF1Q16656 503 aa8.81□□□□□ -1
SS18-220ENST00000582092 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.81□□□□□ -1
SS18-220ENST00000582092 ZNF385BQ569K4 471 aa8.81□□□□□ -1
SS18-220ENST00000582092 MANEAQ5SRI9 462 aa8.81□□□□□ -1
SS18-220ENST00000582092 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.81□□□□□ -1
SS18-220ENST00000582092 NDUFAF5Q5TEU4 345 aa8.81□□□□□ -1
SS18-220ENST00000582092 ABHD17CQ6PCB6 329 aa8.81□□□□□ -1
SS18-220ENST00000582092 RNF111Q6ZNA4 994 aa8.81□□□□□ -1
SS18-220ENST00000582092 DBX2Q6ZNG2 339 aa8.81□□□□□ -1
SS18-220ENST00000582092 GLRX5Q86SX6 157 aa8.81□□□□□ -1
SS18-220ENST00000582092 TRIM73Q86UV7 250 aa8.81□□□□□ -1
SS18-220ENST00000582092 LILRA2Q8N149 483 aa8.81□□□□□ -1
SS18-220ENST00000582092 NAGSQ8N159 534 aa8.81□□□□□ -1
SS18-220ENST00000582092 ZCCHC7Q8N3Z6 543 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 ACOT4Q8N9L9 421 aa8.81□□□□□ -1
SS18-220ENST00000582092 TMEM102Q8N9M5 508 aaPredicted RBP8.81□□□□□ -1
SS18-220ENST00000582092 PAPD5Q8NDF8 572 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 OR52E4Q8NGH9 312 aa8.81□□□□□ -1
SS18-220ENST00000582092 OR52N2Q8NGI0 321 aa8.81□□□□□ -1
SS18-220ENST00000582092 OR8K5Q8NH50 307 aa8.81□□□□□ -1
SS18-220ENST00000582092 GOT1L1Q8NHS2 421 aaPredicted RBP8.81□□□□□ -1
SS18-220ENST00000582092 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.81□□□□□ -1
SS18-220ENST00000582092 NT5CQ8TCD5 201 aa8.81□□□□□ -1
SS18-220ENST00000582092 ZFP90Q8TF47 636 aa8.81□□□□□ -1
SS18-220ENST00000582092 PATE1Q8WXA2 126 aa8.81□□□□□ -1
SS18-220ENST00000582092 TPD52L3Q96J77 140 aa8.81□□□□□ -1
SS18-220ENST00000582092 ZNF570Q96NI8 536 aa8.81□□□□□ -1
SS18-220ENST00000582092 CIB1Q99828 191 aa8.81□□□□□ -1
SS18-220ENST00000582092 MACROD1Q9BQ69 325 aa8.81□□□□□ -1
SS18-220ENST00000582092 ORAI3Q9BRQ5 295 aa8.81□□□□□ -1
SS18-220ENST00000582092 OSBPL11Q9BXB4 747 aa8.81□□□□□ -1
SS18-220ENST00000582092 KLHL25Q9H0H3 589 aa8.81□□□□□ -1
SS18-220ENST00000582092 KLHL31Q9H511 634 aa8.81□□□□□ -1
SS18-220ENST00000582092 CACYBPQ9HB71 228 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 AGPAT4Q9NRZ5 378 aa8.81□□□□□ -1
SS18-220ENST00000582092 ACSS1Q9NUB1 689 aaPredicted RBP8.81□□□□□ -1
SS18-220ENST00000582092 THUMPD1Q9NXG2 353 aaKnown RBP8.81□□□□□ -1
SS18-220ENST00000582092 MS4A12Q9NXJ0 267 aa8.81□□□□□ -1
SS18-220ENST00000582092 EHD3Q9NZN3 535 aa8.81□□□□□ -1
SS18-220ENST00000582092 DNAJB9Q9UBS3 223 aa8.81□□□□□ -1
SS18-220ENST00000582092 FTSJ1Q9UET6 329 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms