RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NAE1Q13564 534 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 FRG1Q14331 258 aaKnown RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 MORF4L2Q15014 288 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 TOMM20Q15388 145 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 PPP1R7Q15435 360 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 WIPI1Q5MNZ9 446 aaPredicted RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 PRAMEF20Q5VT98 475 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 NSUN5P2Q63ZY6 315 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 TTC27Q6P3X3 843 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 MEIOBQ8N635 442 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 NAT8LQ8N9F0 302 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 UTP15Q8TED0 518 aaKnown RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 TMEM171Q8WVE6 324 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 LPGAT1Q92604 370 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 MS4A14Q96JA4 679 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 HAUS8Q9BT25 410 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 GSX2Q9BZM3 304 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 AMBRA1Q9C0C7 1298 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 OR8D2Q9GZM6 311 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 CXorf56Q9H5V9 222 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 ZNF703Q9H7S9 590 aaPredicted RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 QPCTLQ9NXS2 382 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 COPS7AQ9UBW8 275 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 PPIEQ9UNP9 301 aaKnown RBP10.19□□□□□ -0.78
VPS53-207ENST00000570510 COMMD10Q9Y6G5 202 aa10.19□□□□□ -0.78
VPS53-207ENST00000570510 ZANQ9Y493 2812 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 SYNDIG1LA6NDD5 238 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 GFYI3L273 518 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 HIST1H2AGP0C0S8 130 aaPredicted RBP10.18□□□□□ -0.78
VPS53-207ENST00000570510 RFPL3SP0C7P2 107 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 MPC1LP0DKB6 136 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 HIST1H2ADP20671 130 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 PPP2R1BP30154 601 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 RPL21P46778 160 aaKnown RBP10.18□□□□□ -0.78
VPS53-207ENST00000570510 ATP5J2P56134 94 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 HSD17B7P56937 341 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 RNF4P78317 190 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 CRADDP78560 199 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 STX4Q12846 297 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 CSHL1Q14406 222 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 ELAVL1Q15717 326 aaKnown RBP10.18□□□□□ -0.78
VPS53-207ENST00000570510 BBS9Q3SYG4 887 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 RNASEH2BQ5TBB1 312 aaKnown RBP10.18□□□□□ -0.78
VPS53-207ENST00000570510 POMZP3Q6PJE2 187 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 AGTRAPQ6RW13 159 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 PLEKHM3Q6ZWE6 761 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 CLNKQ7Z7G1 428 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 GALNT7Q86SF2 657 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 CAND1Q86VP6 1230 aaKnown RBP10.18□□□□□ -0.78
VPS53-207ENST00000570510 HIPK1Q86Z02 1210 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 CA13Q8N1Q1 262 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 ZNF441Q8N8Z8 693 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 MAPK1IP1LQ8NDC0 245 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 FAM13CQ8NE31 585 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 TRPV3Q8NET8 790 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 SLC22A8Q8TCC7 542 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 HIST1H2AHQ96KK5 128 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 SERPINB12Q96P63 405 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 TIMP4Q99727 224 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 HIST1H2AJQ99878 128 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 H2AFJQ9BTM1 129 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 MED18Q9BUE0 208 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 PHACTR1Q9C0D0 580 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 INTS10Q9NVR2 710 aaKnown RBP10.18□□□□□ -0.78
VPS53-207ENST00000570510 ZFP69BQ9UJL9 534 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 PYCARDQ9ULZ3 195 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 SH2B3Q9UQQ2 575 aa10.18□□□□□ -0.78
VPS53-207ENST00000570510 A0A088AWK7 358 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 TRBC2A0A5B9 178 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 FAM187AA6NFU0 413 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 CD8B2A6NJW9 211 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 KDM4EB2RXH2 506 aaPredicted RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 EIF3FO00303 357 aaPredicted RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 DNALI1O14645 258 aaPredicted RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 TLX2O43763 284 aaPredicted RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 ZNF10P21506 573 aaPredicted RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 NMBRP28336 390 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 GCKP35557 465 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 NR1H2P55055 460 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 BTN3A2P78410 334 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 ASPHQ12797 758 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 TNK1Q13470 666 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 VEZF1Q14119 521 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 RBBP5Q15291 538 aaKnown RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 LCTLQ6UWM7 567 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 ZNF572Q7Z3I7 529 aaPredicted RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 MORN4Q8NDC4 146 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 OR14A16Q8NHC5 309 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 NT5CQ8TCD5 201 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 WDR83Q9BRX9 315 aaKnown RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 DOHHQ9BU89 302 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 SFXN3Q9BWM7 321 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 CALHM2Q9HA72 323 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 JKAMPQ9P055 326 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 NPFFR2Q9Y5X5 522 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 MAD1L1Q9Y6D9 718 aa10.17□□□□□ -0.78
VPS53-207ENST00000570510 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS53-207ENST00000570510 SONP18583 2426 aaKnown RBP10.17□□□□□ -0.78
VPS53-207ENST00000570510 ARHGAP21Q5T5U3 1957 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 MBD3L3A6NE82 208 aaPredicted RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms