RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SLC34A3Q8N130 599 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 WFDC5Q8TCV5 224 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 ADAMTS19Q8TE59 1207 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 MTERF3Q96E29 417 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 NPAS1Q99742 590 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 TMEM168Q9H0V1 697 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 SLC6A15Q9H2J7 730 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 SLC6A13Q9NSD5 602 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 PLCXD1Q9NUJ7 323 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 MALT1Q9UDY8 824 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 MAFFQ9ULX9 164 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 ZNF451Q9Y4E5 1061 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 PCDHGB3Q9Y5G1 929 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 ZNF106Q9H2Y7 1883 aaKnown RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 MTCL1Q9Y4B5 1905 aaKnown RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 SLC22A23A1A5C7 686 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 GRXCR2A6NFK2 248 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 GTPBP1O00178 669 aaKnown RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 PER2O15055 1255 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 CHP2O43745 196 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 ORC5O43913 435 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 PLATP00750 562 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 F11P03951 625 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 CA3P07451 260 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 FPR1P21462 350 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 MAOBP27338 520 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 ZNF81P51508 661 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 S100A12P80511 92 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 TAF1AQ15573 450 aaPredicted RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 DUSP6Q16828 381 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 AFTPHQ6ULP2 937 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 TMPRSS9Q7Z410 1059 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 ZSWIM9Q86XI8 627 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 C19orf18Q8NEA5 215 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 DUSP18Q8NEJ0 188 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 CIDECQ96AQ7 238 aaPredicted RBP12.71□□□□□ -0.37
CLK3-206ENST00000562078 MARVELD1Q9BSK0 173 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 CD244Q9BZW8 370 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 ZNF222Q9UK12 451 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 ACSL5Q9ULC5 683 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 MAPRE3Q9UPY8 281 aa12.71□□□□□ -0.37
CLK3-206ENST00000562078 MYO7AQ13402 2215 aa12.71□□□□□ -0.38
CLK3-206ENST00000562078 CHD9Q3L8U1 2897 aa12.71□□□□□ -0.38
CLK3-206ENST00000562078 hCG_1807616A0A1W2PRN6 198 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 NCF1BA6NI72 391 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 NCF1CA8MVU1 366 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 LINC00587B1AMM8 73 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 F8W036 122 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 OR4F21O95013 312 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 HMGN1P05114 100 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 C8AP07357 584 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 NCF1P14598 390 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 CDKN1CP49918 316 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 CYP4F8P98187 520 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 DMC1Q14565 340 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 ZNF169Q14929 603 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 SHHQ15465 462 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 ATXN7L2Q5T6C5 722 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 OR4F3Q6IEY1 312 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 C17orf107Q6ZR85 190 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 Q6ZSR9 355 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 GHDCQ8N2G8 530 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 HJURPQ8NCD3 748 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 OR52E4Q8NGH9 312 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 SPPL3Q8TCT6 385 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 ESAMQ96AP7 390 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 AARSD1Q9BTE6 412 aaKnown RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 REG4Q9BYZ8 158 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 CLEC4MQ9H2X3 399 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 PIGUQ9H490 435 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 LDAHQ9H6V9 325 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 RANBP3Q9H6Z4 567 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 IL21Q9HBE4 155 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 SDHAF2Q9NX18 166 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 LHX3Q9UBR4 397 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 RAB23Q9ULC3 237 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 SLC6A14Q9UN76 642 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 BAIAP2Q9UQB8 552 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 FCF1Q9Y324 198 aaKnown RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 PRRC2BQ5JSZ5 2229 aaKnown RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 A0A0A6YYJ9 748 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 A0A0B4J203 849 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 TRAV20A0A0B4J274 112 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 IQCMA0A1B0GVH7 501 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 C2orf81A6NN90 581 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 SUPT3HB4E1H0 165 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 INMT-MINDY4F8WBC2 141 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 LYRM1O43325 122 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 AKAP8O43823 692 aaKnown RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 SLC43A1O75387 559 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 GLUD1P00367 558 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 HRGP04196 525 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 SLC2A2P11168 524 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 CSKP41240 450 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 RANBP2P49792 3224 aaKnown RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 AGTR2P50052 363 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 RHOAP61586 193 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 VLDLRP98155 873 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 LGALSLQ3ZCW2 172 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 TRIQKQ629K1 86 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms